DRAWID: user-friendly Java software for chromosome measurements and idiogram drawing
...of advantages including a user-friendly interactive interface, possibility for simultaneous chromosome and FISH/GISH/banding sign...as number of useful functions facilitating the procedure of chromosome analysis," explain the sci...2409 days ago
simNGS and simLibrary – Software for Simulating Next-Gen Sequencing Data
...run of the machine, randomly generates noisy intensities representing the signals for the sequence at each cycle and calculates likelihoods for all possible base calls.2409 days ago
Oxford Nanopore Sequencing, Hybrid Error Correction, and de novo Assembly of a Eukaryotic Genome
...onitoring the progress of DNA molecules through a membrane pore has been postulated as a method for sequen...atures of the genome and correctly assembles gene cassettes, rRNAs, transposable elements, and other genom...2408 days ago
Computational Genomics: Applied Comparative Genomics
...g from raw sequencing data. The course will focus on human genomics and human medical applications, but the techniques will be broadly applicable across the tree of life. The topics...2408 days ago
PLAST: A fast, accurate and NGS scalable bank-to-bank sequence similarity search tool
...;and is was published in BMC Bioinformatics. PLAST is a general purpose sequence comparison tool pro...tional hardware, since it is a software solution. It is easy to install, cost-effective, takes full advant...2406 days ago
dnaPipeTE: de-novo assembly & annotation Pipeline for Transposable Elements
...ovo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify Transposable Elements in small samples...http://lbbe.univ-lyon1.fr/-Equipe-Elements-transposables-.html?lang=en You c...2404 days ago
MinION_GC: An R script to do some QC on MinION data
...slow and computationally intensive. The benefit of this approach is that it works on a single, small, .txt summary file. So it's a lot quicker than most other things out there: it t...2403 days ago
MetaSim A Sequencing Simulator for Genomics and Metagenomics.
Our software can be used to generate collections of synthetic reads that reflect the diverse taxonomical composition of typical metagenome data sets. Based on a database o...2403 days ago
Bandage: interactive visualization of de novo genome assemblies
...e graph. By displaying connections between contigs, Bandage presents new possibilities for analyzing de novo assemblies that are not possible through investigation of...2403 days ago
Harvest: a suite of core-genome alignment and visualization tools
...p;- Core-genome alignment and analysis Gingr - Interactive visualization of alignments, trees and variants HarvestTools - Archiving and postprocessing...2399 days ago