EGAD: Ultra-fast functional analysis of gene networks
...function prediction algorithm which is fully vectorized (neighbor_voting), allowing network characterization across even thousands of functional groups to be accomplished in minute...2032 days ago
2029 days ago
ARCS: scaffolding genome drafts with linked reads
ARCS requires two input files: Draft assembly fasta file Interleaved linked reads file (Barcode sequence expected in the BX tag of the read header or in the form "@readname_barcode" ; Run Long Ranger basic on raw chromium reads to produce this interleaved file)2028 days ago
Biotite: A general framework for computational biology
...ationally efficient due to intensive usage of NumPy and Cython. This package focuses on working with sequence and structure data and supports various file formats and...2028 days ago
Versatile genome assembly evaluation with QUAST-LG
...ed for evaluating large-scale genome assemblies (up to mammalian-size). QUAST-LG... CHANGES for all): Significant speedup achieved by both use of...enhanced reference-free analysis The concept of upper bound assembly (theor...2024 days ago
GeneOverlap: An R package to test and visualize gene overlaps
...tion. Similary, we can perform such kind of overlapping between the gene lists of different histone modifications with that of various expression groups and establish each histone m...2018 days ago
2015 days ago
GenomeView: genome browser and annotation editor
...annotation editor that displays reference sequence, annotation, multiple alignments, short read alignments and graphs. Most major data formats are supported. Local and internet fil...2013 days ago
2013 days ago
ZENBU: a collaborative, omics data integration and interactive visualization system
..." data processing and interactive linked-visualizations and is able to make many-views from the same primary sequence alignment data which users can uploaded from BAM, BED, GFF and...2010 days ago