Quip: Aggressive compression of FASTQ, SAM and BAM files.
This will help us to reduce the amount of drive space we take up and decrease data transfer times Quip compresses next-generation sequencing data with extreme prejudice....773 days ago
Choosing the Right NGS Sequencing Instrument for Your Study
The right sequencing instrument for your study depends on your project goal. Se...truments available. If you’re new to high-throughput sequencing and have questions about how you should design your sequencing run, fill out our free c...751 days ago
HairSplitter: assembling long reads in an unknown number of haplotypes
Pros and cons of HairSplitter Limitations of HairSplitter:...pes and distinguish repeated elements Only needs sequencing reads, potentially error-pron...pes and distinguish repeated elements Only needs sequencing reads, potentially error-pron...576 days ago
479 days ago
Proksee: in-depth characterization and visualization of bacterial genomes
Proksee is an expert system for genome assembly, annotation and visualization. To begin using Proksee, provide a complete genome sequence, sequencing reads or a CGView/Proksee map JSON file.422 days ago
pipesnake: bioinformatics best-practice analysis pipeline for phylogenomic reconstruction
ausarg/pipesnake is a bioinformatics best-practice analysis pipeline for phylogenomic reconstruction starting from short-read 'second-generation' sequencing data. The pipeline is built...134 days ago
A web-based tool for sequence alignment statistics and innovative visualization
AlignStatPlot, a new R package and online tool that is well-documented and easy-to use...analysis. This tool performs both traditional and cutting-edge analy-ses on sequencing data and generates new visual...92 days ago
MIKE: an ultrafast, assembly-, and alignment-free approach for phylogenetic tree construction
MIKE (MinHash-based k-mer algorithm). This algorithm is designed for the swift calculation of the Jaccard coefficient directly from raw sequencing reads and enables the constru...88 days ago
Bactopia: a flexible pipeline for complete analysis of bacterial genomes
Bactopia is a flexible pipeline for complete analysis of bacterial genomes. The goal o...atasets as well as your own datasets to further enhance the analysis of your sequencing. Bactopia only uses software...26 days ago