MIX: Combining multiple assemblies from NGS data
Mix is a tool that combines two or more draft assemblies, without relying on a reference genome and has the goal to reduce contig fragmentation and thus speed-up genome...2253 days ago
kWIP: The k-mer weighted inner product, a de novo estimator of genetic similarity
The k-mer Weighted Inner Product. This software implements a de novo, alignment free measure of sample genetic d...g one. De novo estimates of genetic relatedness from next-gen sequencing data ht...2232 days ago
SEX-DETector: A Probabilistic Approach to Study Sex Chromosomes in Non-Model Organisms
SEX-DETector is a probabilistic method that relies on RNAseq data from a cross (parents and progeny of each sex) to infer autosomal and s...not require prior sequencing of a reference genome: the same sequencing data ca...2231 days ago
2230 days ago
2225 days ago
PRICE (Paired-Read Iterative Contig Extension), a de novo genome assembler implemented in C++.
We are pleased to release PRICE (Paired-Read Iterative Contig Extension), a de novo ge...e individual reads from a subset of the paired-read dataset, non-paired reads from sequencing technologies that provide non-paired data, o...2220 days ago
2219 days ago
HiGlass: a tool for exploring genomic contact matrices and tracks.
HiGlass is a tool for exploring genomic contact matrices and tracks. Please take a loo...plore and compare contact matrices. To load private data, HiGlass can be run locally within a Docker container. The HiC data in...2219 days ago
RestrictionDigest: A powerful Perl module for simulating genomic restriction digests
RestrictionDigest can simulate the reference genome digestion and generate comp...re information, please see the academic paper published online (http://www.sciencedirect.com/science/article/pii/S071734581630001X...2218 days ago
MECAT: fast mapping, error correction, and de novo assembly for single-molecule sequencing reads
MECAT is an ultra-fast Mapping, Error Correction and de novo Assembly Tools for single...5 days to assemble a human genome based on 54x SMRT data, which is 40 times faster tha...p;FALCON and Canu(v1.3) in five real dataset...2250 days ago