SeqMonk:A tool to visualise and analyse high throughput mapped sequence data
...o enable the visualisation and analysis of mapped sequence data. It was written for use with mapped next generation sequence data but can in theory be use...a groups for visualisation and analysis Visualisation of mapped regi...between data sets Statistical analysis of data to find regions of in...2122 days ago
2112 days ago
2105 days ago
EvidentialGene: tr2aacds, mRNA Transcript Assembly Software
Quality assessment of this mRNA Transcript Assembly Software is described in EvidentialGene_quality. Too many...nscripts that one or other transcript assembler may produce. It is the "right sequence...2101 days ago
S-plot2: Rapid Visual and Statistical Analysis of Genomic Sequences
S-plot2 creates an interactive, two-dimensional heatmap capturing the similarities and dissimilarities in nucleotide usage between genomic sequence...2100 days ago
Wtdbg2: a de novo sequence assembler for long noisy reads produced by PacBio or Oxford Nanopore
Wtdbg2 is a de novo sequence assembler for long noisy reads produced by PacBio or Oxford Nanopore Technologies (ONT). It assembles raw reads without error corr...2084 days ago
CSBFinder: Discovery of colinear syntenic blocks across thousands of prokaryotic genomes
CSBFinder is a standalone Desktop java application with a graphical user interface, th...ts a novel methodology for the discovery, ranking, and taxonomic distribution analysis of colinear syntenic blocks (...2078 days ago
2078 days ago
Platypus: A Haplotype-Based Variant Caller For Next Generation Sequence Data
Platypus is a tool designed for efficient and accurate variant-detection in high-throughput sequencing data. By using local realignment of reads and local assembly...2078 days ago
Referee: Genome assembly quality scores
Modern genome sequencing technologies provide a succint measure of quality at each pos...embly. This allows for easy filtering of low quality sites for any downstream analysis. https://github.com/gwct/ref...2067 days ago