459 days ago
OrthoVenn3: an integrated platform for exploring and visualizing orthologous data across genomes
OrthoVenn3 is a powerful tool for comparative genomics analysis, used as a web server for full genome comparisons, annotation, and evolutionary analysis of orthologous clusters across multiple species. It has already been used by thousands of users from over 60 countries.428 days ago
pipesnake: bioinformatics best-practice analysis pipeline for phylogenomic reconstruction
...or phylogenomic reconstruction starting from short-read 'second-generation' sequencing data. The pipeline is built using Nextflow, a workflow tool to run tasks across multiple...133 days ago
bacLIFE: an automated genome mining tool for identification of lifestyle associated genes
bacLIFE is a streamlined computational workflow that annotates bacterial genomes and performs large-scale comparative genomics to predict bacterial lifestyles and to p...110 days ago
CGView.js is a Circular Genome Viewing tool
CGView.js is a Circular Genome Viewing tool for visualizing and interacting with small genomes. This software is an adaptation of the Java program CGView. CGVi...98 days ago
Minda: a tool for evaluating structural variant (SV) callers
Minda is a tool for evaluating structural variant (SV) callers that standardizes VCF records for compatibility with both germline and somatic SV callers, benchmarks against a single VCF input file, or benchmarks against an ensemble call set created from multiple VCF input files.94 days ago
A web-based tool for sequence alignment statistics and innovative visualization
...atPlot, a new R package and online tool that is well-documented and e...or MSA and post-MSA analysis. This tool performs both traditional and...hencompared to currently available tools, AlignStatPlot provides a ro...ing their findings. It is a simple tool that can be used in conjuncti...90 days ago
MIKE: an ultrafast, assembly-, and alignment-free approach for phylogenetic tree construction
...les. MIKE demonstrated accurate performance across varying evolutionary scales, reproductive modes, and ploidy levels, proving itself as a powerful tool for phylogenetic tree constru...86 days ago
Alvis: a tool for contig and read ALignment VISualisation and chimera detection
Alvis, a simple command line tool that can generate visualisations for a number of common alignment analysis tasks. Alvis is a fast and portable tool that accepts input in a varie...56 days ago
Powerful books for learning data analysis with R
R is powerful tool for data analysis, visualization, and machine learning. And it costs $0 to use! Here are six FREE books you can use to learn R today: https://csgillespie....36 days ago