2030 days ago
SiLiX: implements an ultra-efficient algorithm for the clustering of homologous sequences
...nt algorithm for the clustering of homologous sequences, based on single transitive...ets Data Structure, allows the computation of sequence families with low time a...e datasets. SiLiX is already included in the analysis pipeline for HOGENOM.2030 days ago
EGAD: Ultra-fast functional analysis of gene networks
With the EGAD (Extending ‘Guilt-by-Association’ by Degree) package, we present a series of highly efficient tools to calculate functional properties in netwo...2028 days ago
Purge Haplotigs: Pipeline to help with curating heterozygous diploid genome assemblies
Some parts of a genome may have a very high degree of heterozygosity. This causes cont...n as a contig and an associated haplotig. This can be an issue for downstream analysis whether you're working on the...2025 days ago
ARCS: scaffolding genome drafts with linked reads
ARCS requires two input files: Draft assembly fasta file Interleaved linked reads file (Barcode sequence expected in the BX tag of the read header or in the form "@readname_barcode" ; Run Long Ranger basic on raw chromium reads to produce this interleaved file)2024 days ago
2024 days ago
Biotite: A general framework for computational biology
...onsists of four sub packages: sequence, structure, databases, and application. The sequence and structure modules serve for the analysis of sequence and structural data analysis respectively, database&n...2024 days ago
Versatile genome assembly evaluation with QUAST-LG
QUAST-LG is an extension of QUAST intended for evaluating large-scale genome...completeness and correctness metrics BUSCO added for enhanced reference-free analysis The concept of upper bound&n...2020 days ago
2011 days ago
GenomeView: genome browser and annotation editor
GenomeView is a genome browser and annotation editor that displays reference sequence, annotation, multiple alignments, short read alignments and graphs. Most major data formats are supported....2009 days ago