nQuire: a statistical framework for ploidy estimation using next generation sequencing
nQuire provides a statistical framework to study organisms with intraspecific variation in ploidy. nQuire is likely to be useful in epidemiological studies of pathogens,...2083 days ago
1980 days ago
nQuire: A statistical framework for ploidy estimation using NGS short-read data
nQuire implements a set of commands to estimate ploidy level of individuals from species, where recent polyploidization occurred and intraspecific ploidy variation is obs...1964 days ago
DeCoSTAR: Reconstructing the Ancestral Organization of Genes or Genomes Using Reconciled Phylogenies
DeCoSTAR computes adjacency evolutionary scenarios using a scoring scheme based on a weighted sum of adjacency gains a...ltzmann–Gibbs distribution centered around parsimonious solutions, and statistical...1626 days ago
1609 days ago
MEC: Contig Misassembly Correction
MEC, to identify and correct misassemblies in contigs. Firstly, MEC takes fragment coverage as the feature to detect t...andidate misassemblies based on the distribution of paired-end reads and the statistical...1594 days ago
1591 days ago
jtools : more efficient presentation of regression analyses
This package consists of a series of functions created by the author (Jacob) to automate otherwise tedious research ta...gression analyses. There are a number of functions for other programming and statistical...1587 days ago
iSeqQC: a tool for expression-based quality control in RNA sequencing
iSeqQC, an expression-based QC tool that detects outliers either produced due to variable laboratory conditions or due to dissimilarity within a phenotypic group. iSeqQC implements various statistical...1583 days ago
SHAMAN: a user-friendly website for metataxonomic analysis from raw reads to statistical analysis
SHAMAN is a shiny application for differential analysis of metagenomic data (16S, 18S, 23S...reatment of raw reads for targeted metagenomics, statistical analysis and results visualiz...to be both accurate and fast [Wescott 2015].The statistical...1400 days ago