SiLiX: implements an ultra-efficient algorithm for the clustering of homologous sequences
...A very efficient algorithm, based on the Disjoint Sets Data Structure, allows the computa...be scalable, so that its allows the study of very large datasets. SiLiX is already included in the analysis pipeline for HOGENOM.2034 days ago
EGAD: Ultra-fast functional analysis of gene networks
With the EGAD (Extending ‘Guilt-by-Association’ by Degree) package, we present a series of highly efficient tools to calculate functional properties in netwo...2032 days ago
Purge Haplotigs: Pipeline to help with curating heterozygous diploid genome assemblies
Some parts of a genome may have a very high degree of heterozygosity. This causes c...an as a contig and an associated haplotig. This can be an issue for downstream analysis whether you're working on the...2029 days ago
2029 days ago
Biotite: A general framework for computational biology
...packages: sequence, structure, databases, and application. The&nb...ture modules serve for the analysis of sequence and structural data analysis respectively, database&n...ing with sequence and structure data and supports various file formats and analysis and manipulation functions.2029 days ago
ALLHiC: Phasing and scaffolding polyploid genomes based on Hi-C data
The major problem of scaffolding polyploid genome is that Hi-C signals are frequently detected between allelic haplotypes and any existing stat of art Hi-C scaffolding p...2026 days ago
Versatile genome assembly evaluation with QUAST-LG
QUAST-LG is an extension of QUAST intended for evaluating large-scale gen...completeness and correctness metrics BUSCO added for enhanced reference-free analysis The concept of upper bound&n...2024 days ago
NanoPack: visualizing and processing long-read sequencing data
The NanoPack tools are written in Python3 and released under the GNU GPL3.0 License. The source code can be found at https://github.com/wdecoster/nanopack, together with...2020 days ago
2015 days ago
HECIL: A Hybrid Error Correction Algorithm for Long Reads with Iterative Learning
HECIL—Hybrid Error Correction with Iterative Learning—a hybrid error correction framework that determ...ach iteration by incorporating knowledge gathered from previous iterations via data-dri...2014 days ago