Platypus – R package for object detection and image segmentation.
...l_github("maju116/platypus") Note that in order to install platypus you need to install keras and tensorflow packages and Tensorflow vers...1316 days ago
QuasR: Quantification and annotation of short reads in R
The QuasR package (short for Quantify and annotate short reads in R) integrates the functionality of several R packages (such as IRanges (Lawrence et al. 2013) and Rsamtools) and exter...1039 days ago
RNA-Seq differential expression work flow using DESeq2
One of the aim of RNAseq data analysis is the detection of differentially expressed genes. The package DESeq2 provides methods to test for differential expression analysis.1029 days ago
RNA-seq workflow: gene-level exploratory analysis and differential expression
Here we walk through an end-to-end gene-level RNA-seq differential expression workflow using Bioconductor packages. We will start from the FASTQ files, show how these were quantified t...982 days ago
Introduction to phylogenies in R
R phylogenetics is built on the contributed packages for phylogenetics in R, and there are many such packages. Let's begin today by installing a few cr...nd geiger. To get the most recent CRAN version of these packages, you will need to have R 3.3....978 days ago
913 days ago
836 days ago
Bactopia: a flexible pipeline for complete analysis of bacterial genomes
...or the usage of many public datasets as well as your own datasets to further enhance the analysis of your sequencing. Bactopia only uses software packages available from Bioconda&...9 days ago