Calling variants in non-diploid systems
...pts to do this well have been accomplished on human mitochondrial DNA although the same approaches will work equally good on viral and bacterial genomes (Rebolledo-Jaramillo&...1072 days ago
PaReBrick: PArallel REarrangements and BReaks identification toolkit
...ReBrick’s efficiency and accuracy and showed its potential to detect genome rearrangements responsible for pathogenicity and adaptation in bacterial genomes More at https:/...968 days ago
Proksee: in-depth characterization and visualization of bacterial genomes
Proksee is an expert system for genome assembly, annotation and visualization. To begin using Proksee, provide a complete genome sequence, sequencing reads or a CGView/Proksee map JSON file.389 days ago
bacLIFE: an automated genome mining tool for identification of lifestyle associated genes
...mlined computational workflow that annotates bacterial genomes and performs large-scale comparative genomics to predict bacterial lifestyles and to pinpoint ca...Employs a machine learning model to forecast bacterial lifestyle or other specified...79 days ago
Bactopia: a Flexible Pipeline for Complete Analysis of Bacterial Genomes
Bactopia is a flexible pipeline for complete analysis of bacterial genomes. The goal of Bactopia is to process your data with a broad set of tools, so that you can get to the fun part...18 days ago