Kevler: Reference-free variant discovery in large eukaryotic genomes
Welcome to kevlar, software for predicting de novo genetic variants wi...nts (indels), and structural variants (SVs) simultaneously with a single simple model. More at https://...1578 days ago
shinyCircos: an R/Shiny application for interactive creation of Circos plot
shinyCircos, a graphical user interface for interactive creation of Circos plot. shinyCircos can be easily installe...rious types of Circos plots could be easily generated and decorated with simple mouse...1568 days ago
Leaflet: JavaScript libraries for interactive maps
Leaflet is one of the most popular open-source JavaScript libraries for interactive maps. Features Interac...sp;packages, or data frames with latitude/longitude columns Use map bounds and mouse...1565 days ago
netGO: R-Shiny package for network-integrated pathway enrichment analysis
netGO is an R/Shiny package for network-integrated pathway enrichment analysis.netGO provides user-interactive visu...ted networks. Currently, netGO supports analysis for four species (Human, Mouse...1562 days ago
1546 days ago
DeepHiC: A Generative Adversarial Network for Enhancing Hi-C Data Resolution
DeepHiC is a GAN-based model for enhancing Hi-C data resolution. We developed this server for helping...g could be performed according to our published code. We provided trained models for various depth of low-cov...1543 days ago
1436 days ago
ShadowCaster: a hybrid approach for the detection of horizontal gene transfer events in prokaryotes
ShadowCaster implements an evolutionary model to calculate Bayesian likelihoods for each ‘alien genes’ with an unusual sequence composition according to the host genome backgr...1409 days ago
SHAMAN: a user-friendly website for metataxonomic analysis from raw reads to statistical analysis
SHAMAN is a shiny application for differential analysis of metagenomic data (16S, 18S...obustly identifies the differential abundant genera with the Generalized Linear Model implemented in DESeq2 [Love 2...1375 days ago
pggb: the pangenome graph builder
This pangenome graph construction pipeline renders a collection of sequences into a pangenome graph (in the variation graph model). Its goal is to build a grap...1348 days ago