Results for "run"
Bookmarks
RestrictionDigest: A powerful Perl module for simulating genomic restriction digests
...imulation. It can simulate single-enzyme digestion, double-enzyme digestion and size selection process. It can also analyze multiple genomes at one run and generates concise compari...2206 days ago
- ...rom metagenomic data sets by combining the advantages of the k -NN approach with a smoothing kernel function. TACOA can be easily installed and run on a desktop computer, theref...
2234 days ago
SALSA: A tool to scaffold long read assemblies with Hi-C
...orithm. If you want to use the old version, it can be found in the old_salsa branch. To use the latest version, first run the following commands: cd SALSA make To run the code, you will need Pytho...2203 days ago
JBrowse: Embeddable genome browser built completely with JavaScript and HTML5
...genome browser built completely with JavaScript and HTML5, with optional run-once data formatting tools wr...er HTTP. Serve huge datasets from a single low-cost cloud instance. Can run as a stand-alone app on OSX a...2189 days ago
- ...ions VCFv4.1 or VCFv4.2. The VCFtools in general have been used mainly with diploid data, but the Perl tools aim to support polyploid data as well. Run any of the Perl scripts with...
2150 days ago
FinisherSC:a repeat-aware tool for upgrading de novo assembly using long reads
Here is the command to run the tool: python finisherSC.py destinedFolder mummerPath If you are running on server computer and wo...he following commands can generate 20 threads to run FinisherSC. python finisherS...2137 days ago
CBS Comparative Microbial Genomics group - BioTools download page
..., based on Xubuntu 10.10, available through the open source Ubuntu project. The system can be installed on a virtual computer, allowing the user to run the system alongside any othe...2135 days ago
- GRSR is a Tool for Deriving Genome Rearrangement Scenarios for Multiple Uni-chromosomal Genomes. This tool will do the following steps: Step 1. Run mugsy to get multiple sequence...
2098 days ago
- RapClust is a tool for clustering contigs from de novo transcriptome assemblies. RapClust is designed to be run downstream of the Sailfish or Salmon to...
2092 days ago
Platypus: A Haplotype-Based Variant Caller For Next Generation Sequence Data
...eletions up to several kb. It has been extensively tested on whole-genome, exon-capture, and targeted capture data, it has been run on very large datasets as par...2071 days ago
