2084 days ago
BLAST options, setting and defaults
BLAST stands for Basic Local Alignment Search Tool and was developed by Altschul et al. (1990) and significantly improved by Altschul et al. (1997). It is a v...2025 days ago
regioneR: an R package for the management and comparison of genomic regions
Regioner is an R package for the management and comparison of genomic regions. It offers a set of function for basic m...2024 days ago
ARCS: scaffolding genome drafts with linked reads
ARCS requires two input files: Draft assembly fasta file Interleaved linked reads file (Barcode sequence expected in the BX tag of the read header or in the form "@readname_barcode" ; Run Long Ranger basic on raw chromium reads to produce this interleaved file)2017 days ago
Biotite: A general framework for computational biology
The package is open source and freely available at GitHub (https://github.com/biotit...e. The Biotite package bundles popular tasks in computational biology into an unifying framework, w...2017 days ago
2004 days ago
EXCAVATOR: detecting copy number variants from whole-exome sequencing data
EXCAVATOR, for the detection of copy number variants (CNVs) from whole-exome se...) from whole-exome sequencing data.EXCAVATOR has been published on Genome Biology (http://genomebiology.com/2013/14/10/R120/abstract)...2000 days ago
Genome assembly tutorial "Genome Assembly for short and long reads"
...of the results. At the end of the lab you will know: How to perform basic quality checks on the input d...of an assembly https://bioinformaticsdotca.github.io/high-throughput_biology_20171984 days ago
Osprey: Network Visualization System
Osprey is a software platform for the visualization of complex biological i...Stark, C., Tyers M. "Osprey: A Network Visualization System." Genome Biology 2003 4(3):R22 [Genome Biology] [PDF] [PubMed]&nbs...1984 days ago
SeqKit - a cross-platform and ultrafast toolkit for FASTA/Q file manipulation
FASTA and FASTQ are basic and ubiquitous formats for storing nucleotide and protein sequences. Common manipulations of FASTA/Q file include converting, searching, filte...1984 days ago