Genome assembly training tutorial at Galaxy !
In this tutorial we assemble and annotate the genome of E. coli strain C-1. This strain is routinely used in experimental evolution studies involving bacteriophages. Fo...1269 days ago
Introduction to Bioinformatics and Computational Biology
This is the course material for STAT115/215 BIO/BST282 at Harvard University. Xiaole Shirley Liu (lead instructor)Joshua StarmerMartin HembergTing WangFeng Yue Ming T...1240 days ago
1259 days ago
A guide to machine learning for biologists
Because of the increasing size and inherent complexity of biological data, there has been an increase in the application of machine learning in biology to create useful and predicti...903 days ago
Ten quick tips for deep learning in biology
By taking a comprehensive and careful approach to deep learning based on critical thinking about research questions, planning to maintain rigor, and discerning how work...815 days ago
463 days ago
homologizer: Phylogenetic phasing of gene copies into polyploid subgenomes
This tutorial describes the usage of homologizer to phase gene copies into...an abbreviated version of a soon-to-be published paper in Methods in Molecular Biology. Please see that paper for ma...380 days ago
ContigExtender: a new approach to improving de novo sequence assembly for viral metagenomics data
ContigExtender, was developed to extend contigs, complementing de novo assembly. ContigExtender employs a novel rec...contigs. ContigExtender is effective for extending contigs significantly in in silico...41 days ago