tinycov: standalone command line utility written in python to plot coverage from a BAM file
Tinycov is a small standalone command line utility written in python to plot the coverage of a BAM file quickly. This software was inspired by Matt Edwards' genome coverage plot...1560 days ago
wgd—simple command line tools for the analysis of ancient whole-genome duplications
wgd is a easy to use command-line tool for KS distribution construction named wgd. The wgd suite provides commonly used KS and colinearity analysis workflows toget...1438 days ago
vsFilt: A tool to improve virtual screening by structural filtration of docking poses
...00 docked ligand poses. The results are web-based and can be operated on-line using the built-in HTML5 inte...or can be downloaded for a local use. The vsFilt is freely available on-line, no login required....1314 days ago
MAGIC: A tool for predicting transcription factors and cofactors driving gene sets using ENCODE data
...ther TF mining resources, MAGIC displayed favourable performance in predicting TFs and cofactors that drive gene changes in 4 settings: 1) A cell line expressing or lacking single...1312 days ago
Caretta – A multiple protein structure alignment and feature extraction suite
...hich consistently returns accurate alignments with a higher coverage than current state-of-the-art tools. Caretta is available as a GUI and command-line application and additionally...1291 days ago
1272 days ago
Pandoc: The universal markup converter
Pandoc is a Haskell library for converting from one markup format to another, and a command-line tool that uses this library. Pandoc is a free and open-source document converter, widely used as a writing tool and as a basis for publishing workflows. More at https://pandoc.org/1259 days ago
Luigi: a Python package that helps you build complex pipelines of batch jobs.
...hon (3.6, 3.7, 3.8, 3.9 tested) package that helps you build complex pipelines of batch jobs. It handles de...solution, workflow management, visualization, handling failures, command line integration, and much more....1102 days ago
1018 days ago
ncbi-datasets-cli -- Quickstart: command line tools !
Install and use the NCBI Datasets command line tools The NCBI Datasets datasets command line tools are datasets and dataformat...Use dataformat to convert metadata from JSON Lines format to other formats...937 days ago