ITIS: the Integrated Taxonomic Information System!
...ganizations; and taxonomic specialists. ITIS is also a partner of Species 2000 and the Global Biodiversity Information Facility (GBIF). The ITIS and Species 2000 Catalogue of Life (...1753 days ago
netGO: R-Shiny package for network-integrated pathway enrichment analysis
...s.netGO provides user-interactive visualization of enrichment analysis results and related networks. Currently, netGO supports analysis for four species (Human, Mouse, Arab...1588 days ago
1564 days ago
Phytozome v12.1: plant science community hub for accessing palnts genomic data
...and datasets that have been sequenced elsewhere. As of release v12.1.6, Phytozome hosts 93 assembled and annotated genomes, from 82 Viridiplantae species. More than half of these geno...1554 days ago
ProteoClade: A taxonomic toolkit for multi-species and metaproteomic analysis
...lade helps you analyze two general categories of experiments: Targeted Database Searches: Experiments in which a limited number of species are defined ahead of time, su...1553 days ago
1528 days ago
LR_Gapcloser: a tiling path-based gap closer that uses long reads to complete genome assembly
LR_Gapcloser is a gap closing tool using long reads from studied species. The long reads could be downloaed from public read archive database (for instance, NCBI SRA database ) or be...1496 days ago
ShinyGO v0.61: Gene Ontology Enrichment Analysis + more
...cterial and fungal genomes based on STRING-db! Just paste your gene list to get enriched GO terms and othe pathways for over 315 plant and animal species, based on annotation from Ens...1476 days ago
Liftoff: an accurate tool that maps annotations in GFF or GTF between assemblies
Liftoff, an accurate tool that maps annotations in GFF or GTF between assemblies of the same, or closely-related species. Unlike current coordinate lift-over tools which require...1448 days ago
Predict Gene Ontology with sequences !
...NNZER2 processes bacterial proteomes in minutes and eukaryotic proteomes in an hour. You can use AAI-profiler to summarize a proteome's species neighbors and reveal taxonomi...1441 days ago