MimicrEE2: Genome-wide forward simulations of Evolve and Resequencing studies
MimicrEE2, a multi-threaded Java program for genome-wide forward simulations of evolv...ls (selective sweeps, polygenic adaptation, epistasis). MimicrEE2 runs on any computer with Java installed. It is di...2107 days ago
2093 days ago
Deepbinner: a signal-level demultiplexer for Oxford Nanopore reads
Deepbinner is a tool for demultiplexing barcoded Oxford Nanopore sequencing...s not the raw fast5 files (which Deepbinner requires). You have a small/slow computer. Deepbinner is more computati...2047 days ago
Biotite: A general framework for computational biology
The package is open source and freely available at GitHub (https://github.com/biotite-dev/biotite). This package is.... The Biotite package bundles popular tasks in computational biology...2027 days ago
2013 days ago
GenoViz: Visualization software for genomics
GenoViz provides software applications and re-usable components for data visualizatio...new releases of IGB as compiled code (igb.zip) you can use to run IGB on your computer. If you have questions,...2011 days ago
EXCAVATOR: detecting copy number variants from whole-exome sequencing data
EXCAVATOR, for the detection of copy number variants (CNVs) from whole-exome sequencing data. EXCAVATOR combin...from whole-exome sequencing data.EXCAVATOR has been published on Genome Biology (http://genomebiology....2009 days ago
kallisto: a program for quantifying abundances of transcripts from bulk and single-cell RNA-Seq data
kallisto is a program for quantifying abundances of transcripts from bulk and si...p;can quantify 30 million human reads in less than 3 minutes on a Mac desktop computer using only the read sequences...2006 days ago
molinspiration: broad range of cheminformatics software tools supporting molecule manipulation
Molinspiration offers broad range of cheminformatics software tools support...spiration tools are written in Java, therefore can be used practically on any computer platform.1993 days ago
Osprey: Network Visualization System
Osprey is a software platform for the visualization of complex biological interaction networks. Osprey buil...Stark, C., Tyers M. "Osprey: A Network Visualization System." Genome Biology 2003 4(3):R22 [Genome Biology]...1993 days ago