Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
Hifiasm is a fast haplotype-resolved de novo assembler for PacBio Hifi reads. It can assemble a human genome in se...lies of quality competitive with the best assemblers. It also introduces a new graph...1251 days ago
1211 days ago
GraphUnzip: Phases an assembly graph using Hi-C data and/or long reads.
GraphUnzip, a fast, memory-efficient and accurate tool to unzip assembly graphs into their constituent haplotypes using long reads and/or Hi-C data. As GraphUnzip only connects sequences...percontigs. To demonstrate the efficiency of GraphU...1208 days ago
JumboDB: tool for de Bruijn graph construction
jumboDB tool for fast de Bruijn graph construction from long sequences (reads or genomes) with very low error rate....t rather a subroutine that translates a set of reads into compressed de Bruijn graph....1015 days ago
986 days ago
oGNM:Conformational dynamics based on contact topology in a coarse-grained presentation
...can be crystal contacts defined in structures solved by x-ray crystallography, a protein in homo-/hetero-d...etween predictions and B-factors). The environment consideration in ANM theory was published (1) and reviewe...863 days ago
odgi: optimized dynamic genome/graph implementation
odgi provides an efficient and succinct dynamic DNA sequence graph model, as well as a host of algorithms that allow the use of such graphs in bioinformatic analyses....ank in the global array of nodes. Graphs built from biological data s...partially ordered regions of the graph,...847 days ago
Collection of Graph Visualization tools !
Standard approaches to genome inference and analysis relate sequences to a single linear reference genome. This is efficient but has a fundamental problem: Differences...490 days ago
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62 days ago