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This is a tutorial for using the Pangolin Web Application. For information on using the command line tool, please visit the command line tool usage page. https://cov-lineages.org/resources/pangolin/tutorial.html933 days ago
- ...mere-to-telomere consortium We have sequenced the CHM13hTERT human cell line with a number of technologies. Human genomic DNA was extracted from the cultured cell line. As the DNA is native, modifi...
725 days ago
- This part of the documentation describes the snakemake executable. Snakemake is primarily a command-line tool, so the snakemake executable is the primary way to e...
644 days ago
- gget is a free, open-source command-line tool and Python package that enables efficient querying of genomic databases. gget consists of a collection of separate but interoperable modules, each designed to facilitate one type of database querying in a single line of code.
456 days ago
- ...m. Produces flat cluster with adequate description, very fast. Available as part of the open source Carrot2 framework k-means: base line clustering algorithm, produce...
450 days ago
Creating Genetic Maps from GBS data
...own ancestry is called as mapping population. Many types of mapping population exist. Here we will use the data collected from a Recombinant Inbred Line (RIL) (through selfing) to cr...296 days ago
Alvis: a tool for contig and read ALignment VISualisation and chimera detection
Alvis, a simple command line tool that can generate visualisations for a number of common alignment analysis tasks. Alvis is a fast and portable tool that accepts input in a varie...53 days ago
