CHSMiner: a GUI tool to identify chromosomal homologous segments
...nt usage. It will be useful for both experimentalists and bioinformaticians interested in the structure and evolution of genomes. https://github.com/zhenwang100/CHSMiner...2416 days ago
TULIP - The Uncorrected Long read Itegration Pipeline
...long reads to sparse short seeds, and outputs a graph and scaffold structures. Tulipbulb adds long read sequencing data to these. https://github.com/Generade-nl/TULIP2411 days ago
ONT assembly and Illumina polishing pipeline
This pipeline performs the following steps: Assembly of nanopore reads using Canu. Polish canu contigs using racon (optional). Map a paired-end Illu...2411 days ago
miniasm: very fast OLC-based de novo assembler for noisy long reads
...Install minimap and miniasm (requiring gcc and zlib) git clone https://github.com/lh3/minimap && (cd minimap && make) git clone https://github.com/lh3/miniasm && (c...2407 days ago
Oxford Nanopore Sequencing, Hybrid Error Correction, and de novo Assembly of a Eukaryotic Genome
...quencing the S. cerevisiae genome. To make use of these data, we developed a novel open-source hybrid error correction algorithm Nanocorr (https://github.com/jgurtowski/nanocorr) spec...2405 days ago
Ribbon: Visualizing complex genome alignments and structural variation:
...able by clicking on "instructions" in each tab on the right. Local installation: You can install Ribbon locally from Github by following the instructions here: https://github.com/MariaNattestad/Ribbon2405 days ago
dnaPipeTE: de-novo assembly & annotation Pipeline for Transposable Elements
dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify Transposable Elements in sma...2402 days ago
MinION_GC: An R script to do some QC on MinION data
...txt summary file. So it's a lot quicker than most other things out there: it takes about a minute to analyse a 4GB flowcell on my laptop. https://github.com/roblanf/minion_qc2401 days ago
2394 days ago
Bandage: interactive visualization of de novo genome assemblies
...ion: Source code and binaries are freely available at https://github.com/rrwick/Bandage. Bandage i...A full feature list and screenshots are available at http://rrwick.github.io/Bandage.2400 days ago