1202 days ago
A guide to machine learning for biologists
Because of the increasing size and inherent complexity of biologic...lication of machine learning in biology to create useful and predictive models of the unde...fic methods are highly variable and can appear baffling at first...as well as some best practises and points to consider when embarking...898 days ago
GEnView: A phylogeny based comparative genomics software to analyze the genetic environment of genes
A phylogeny based comparative genomics software to analyze the genetic environment of genes. The use...an select one or several taxa and provide one or several reference protein(s). Genomes and plasmids (based on user choic...898 days ago
Ten quick tips for deep learning in biology
By taking a comprehensive and careful approach to deep learning based on critical thi...out research questions, planning to maintain rigor, and discerning how work might hav...community can advance reproducible, interpretable, and hig...811 days ago
458 days ago
homologizer: Phylogenetic phasing of gene copies into polyploid subgenomes
...n-to-be published paper in Methods in Molecular Biology. Please see that paper for many more details and practical considerations for...be the method: Freyman, W.A., Johnson, M.G., and C.J. Rothfels. 2022. Homologizer: phylogenetic phasing of gene copies into p...376 days ago
Creating Genetic Maps from GBS data
Genetic map, as the name suggest is simply knowing the relative positions of specific seq...method is to use a cross between the known parents and examining their progenies. Th...ant Inbred Line (RIL) (through selfing) to create a genetic...279 days ago
50 days ago