HS3D: Homo Sapiens Splice Sites Dataset
...ional Journal of Modern Physics C, 13(8), 1105-1117. (please cite this paper) 2. P.Pollastro, S.Rampone (2003). HS3D: Homo Sapiens Splice Site Data Set , Nucleic Acids Research, 2003 Annual Database Issu...1467 days ago
medaka: Sequence correction provided by ONT Research
medaka is a tool to create a consensus sequence from nanopore sequencing data. This task is performed using neural networks applied from a pileup of individual se...1492 days ago
1462 days ago
sunbeam: A robust, extensible metagenomics pipeline
Sunbeam is a pipeline written in snakemake that simplifies and automates many...oyed on most Linux workstations and clusters. To read more, check out our paper in Microbiome. https://sunbe...1461 days ago
PhiSpy: PhiSpy identifies prophages in Bacterial (and probably Archaeal) genomes
PhiSpy identifies prophages in Bacterial (and probably Archaeal) genomes. Given an annotated genome it will use several approaches to identify the most likely prophage...1448 days ago
1440 days ago
RosettaAntibodyDesign (RAbD): A general framework for computational antibody design
RosettaAntibodyDesign (RAbD) is a generalized framework for the design of antibodi...orth/Dunbrack CDR definition as outlined in the North/Dunbrack clustering paper. More at https://www.rosett...1367 days ago
Applied Computational Genomics Course at UU: Spring 2020
This course will provide a comprehensive introduction to fundamental concepts and experimental approaches in the anal...ntal data formats and analysis strategies that underlie computational genomics resea...1273 days ago
1258 days ago
Understanding pango networks !
In the vast majority of instances it is expected that Pango lineage names and designati...www.pango.network/how-does-the-system-work/what-are-pango-lineages/ Reference paper https://www.nature.com/artic...976 days ago