Results for "Graphs"
Blogs
List of gene ontology software and tools
...ms and summarize them by removing redundant GO terms. The remaining terms can be visualized in semantic similarity-based scatterplots, interactive graphs, or tag clouds. http://revig...3768 days ago
String graph based genome assembly software and tools !
...curves in the plane; each curve is called a "string". String graphs were first proposed by E. W....ii) Simpson-Durbin algorithm is that it does not rely on de Bruijn graphs, and instead employs a differ...2387 days ago
Bookmarks
- ...to the basics of R, focusing on a few common tasks that biologists need to perform some basic analysis: load a table, plot some graphs, and perform some basic stati...
3966 days ago
Bioinformatics algorithms tutorials
Useful bioinformatics tutorial, such as De Bruijn Graphs for NGS AssemblyAlgorithms for PacBio ReadsSoftware and Hardware Concepts for BioinformaticsFinding us in Homolog.us (Search...3661 days ago
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Pages
A guide for complete R beginners :- Getting data into R
...spaces in a columns with ‘NA’ . The last two examples will still work with our file and give the same result as with only headers=T Graphs to get an idea of what R is...3416 days ago
Genome Assembly Tools and Software - PART2 !!
...sp;is a parallel short read assembler for large genomes using de Bruijn graphs. Taking advantage of both sha...l variants assembling based on maximum-bandwidth paths in weighted read graphs and frequency estimation via...2744 days ago
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Top-level pages
- ...field that is may not be your strong point. Excel is fine for creating graphs. If you’re serious abou...search focuses on image informatics and scalable querying and mining of graphs.For more detail visit: h...
4004 days ago
- ...uts. This can solve many problems such as the maximum flow for directed graphs, notably by using the simplex...of reduction is finding the simplest transformation possible. Using graphs Many problems, such as pla...
4004 days ago
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Wire posts
News
Release Notes for Genome Workbench 2.10.5
...eatures in latest release New ProSplign tool integrated with Genome Workbench (Tutorial, Video) New export function for BAM/cSRA coverage graphs (Tutorial) New export functi...2973 days ago
Bio-Scripts
Pack a perl program with their dependencies on Ubuntu !
...hub.com - A JavaScript module for the visualization of genomic sequence graphs. It automatically generates a "tube map"-like visualization of sequence graphs which have been created with...1569 days ago
Tags
Panacus : A Counting Tool for Pangenome Graphs
panacus is a tool for calculating statistics for GFA files. It supports GFA files with P and W lines, but requires that the graph is blunt, i.e., nodes do not overlap and consequently, each link (L) points from the end of one segment (S) to the start of ano...Tags: Panacus, Counting, Tool, Pangenome, Graphs, GFA
18 days ago
MGRA: Breakpoint graphs and ancestral genome reconstructions
MGRA (Multiple Genome Rearrangements and Ancestors) is a tool for reconstruction of ancestor genomes and evolutionary history of extant genomes. It takes as an input a set of genomes represented as sequences of genes (or synteny blocks) and produces such sequences for ancestral genomes at the in...Tags: MGRA, Breakpoint, graphs, ancestral, genome, reconstructions
2534 days ago
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Comments
Comment on "Sibelia: A comparative genomics tool"
...son Tool" (poster), WABI 2012 http://bioinf.spbau.ru/sites/default/files/SyntenyFinder.pdf 2. Max A. Alekseyev and Pavel A. Pevzner. "Breakpoint graphs and ancestral genome reconst...1343 days ago
- ...is tool provides an overview to inform about problematic areas, summary graphs and tables to rapid assessmen...and Roche 454 platforms with detailed results in the form of tables and graphs, and filtering of high-qualit...
2195 days ago
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