Ancient whole genome duplication (WGD) detection tools !
...kde: KDE fitting to the Ks distribution ksd: Ks distribution construction mcl: BLASP comparison of All-vs-ALl + MCL classification analysis. mix: Hybrid modeling of Ks distri...1189 days ago
MIX: Combining multiple assemblies from NGS data
Mix is a tool that combines two or more draft assemblies, without relying on a refer...a path in the extension graph that maximizes the cumulative contig length. The Mix algorithm, approach and resul...2223 days ago
Apps for Busy Bioinformatics Researchers !!!
...enomic information but it is based on your genome and it is unique, it is yours. It will be used in upcoming Portable Genomics applications to mix and remix music, manipulate sounds and...3575 days ago
Update Genome Workbench 2.7.15 released
...plication for viewing and analyzing sequence data. With Genome Workbench, you can view data in publically available sequence databases at NCBI, and mix this data with your own priva...3754 days ago
Research Fellow @ Mendel laboratory
...tware solutions/routines on clusters of CPUs and GPUs. The correct cultural background (training in Biology / Computer Science / Statistics or a mix of the three) and a strong in...3847 days ago
Bioinformatics position at IRCCS Casa Sollievo della Sofferenza
...tware solutions/routines on clusters of CPUs and GPUs. The correct cultural background (training in Biology / Computer Science / Statistics or a mix of the three) and a strong in...3558 days ago
2108 days ago
Set up WGD environment using conda !
...p + MCL clustering. kde Fit a KDE to a Ks distribution. ksd Ks distribution construction. mcl All-vs.-all blastp + MCL clustering. mix Mixture modeling of Ks distributi...1237 days ago
MIX: Combining multiple assemblies from NGS data
Mix is a tool that combines two or more draft assemblies, without relying on a reference genome and has the goal to reduce contig fragmentation and thus speed-up genome finishing. The proposed algorithm builds an extension graph where vertices represent extremities of contigs and edges represent ...Tags: MIX, Combining, multiple, assemblies, NGS, data, Tools
2223 days ago