Results for "Mapping-free"
Blogs
Five points for bioinformatics software/tools
In the bioinformatics sector we mostly spend time on computational analysis of huge amounts of data and try to make sense of it, biologically. But, most of the newbie bioi...3764 days ago
Tools to detect synteny blocks regions among multiple genomes
The synteny block (which etymologically means “on the same ribbon”) is a collection of contiguous genes located on the same chromosome. These block regions hav...2666 days ago
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Bookmarks
Online Courses for biology beginners
Most of the time we face some biological problems while analysing our data computationally. This bookmark is being created to provide list of all free online courses at one place. If you know any other good online cource resources to learn biology please let me know.4000 days ago
- Cava Packager allows packaging of applications written in Perl. Packaged applications can be distributed without the need for an installation of Perl on the target machine...
3973 days ago
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Files
Bioinformatics approach to Boar Taint
Meat products obtained from intact male pigs often produce offensive smell or odour which is recognized as a complex genetic trait called boar taint.Androstenone and Skato...3846 days ago
Statistics Using R with Biological Examples
This book is a manifestation of my desire to teach researchers in biology a bit more about statistics than an ordinary introductory course covers and to introduce the util...2587 days ago
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Discussion topics
- Like in case of plant genomes where nature of genome is too complex and huge in size to accomplish complete de novo assembly by current sequencing technology. What would be alternate solution? Can we live in reference free world?
4001 days ago
Pages
Bio++ : C Language libraries for your biological need
C has always been a language that never attempts to tie a programmer down - it allows for easy implementation, it comes with a genuinely useful standard library that can i...4004 days ago
- Ruby was created by Yukihiro Matsumoto, who wished to create a new language that balanced functional programming with imperative programming Ruby is a dynamic, reflective...
4004 days ago
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Top-level pages
- "Bioinformatics is a science of biological predictions and analysis" -- Jitendra Narayan "The mathematical, statistical and computing methods that aim to solve biolo...
4004 days ago
- Data mining, the extraction of hidden predictive information from large databases. Data mining is becoming an increasingly important tool to transform this data into infor...
4003 days ago
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Wire posts
News
- Google provide free class for people with a little bit of programming experience who want to learn Python. The google python class includes written materials, lecture vide...
4008 days ago
NGS course Medical Genomics, scheduled for 17-20 September 2013 in UZ Leuven (Belgium).
This course is open to all students and postdocs and registration for all academic participants is free of charge. To help us in organizing the course, please register onl...3975 days ago
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Opportunity posts
Livestock Functional Genomics Summer School (LFG 2013)
*Livestock Functional Genomics Summer School - Call for applications* 1st Livestock Functional Genomics Summer School (LFG 2013). This School was designed for gradua...3985 days ago
Ph.D. Fellowship (Computational Biology/Bioinformatics) : Cork, Ireland : Cork, Ireland
Ph.D. Fellowship (18,000 euro/pa, plus tuition fees at the EU students rate) is available for four years to work on development of Bioinformatics resources for the analysi...3972 days ago
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ResearchLabs posts
- Melanie Bahlo is an applied statistician working in the areas of statistical genetics, bioinformatics and population genetics. Her main area of research is linkage mapping...
4004 days ago
- Roslin Bioinformatics Group The Law group provides internal Institute-specific development, training and support roles for data manipulation, sequence analysis and any...
3870 days ago
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Video
- View more AMAZING medical animations at http://www.nucleuslibrary.com To download FREE medical animations of pregnancy and birth, visit http://www.prenateperl.com/yt2012...
3874 days ago
Bioinformatics -- Understanding of living systems through information science
Recently, the progress of the Human Genome Project, aiming to decode all human DNA sequences, has highlighted a research field called bioinformatics. In this new field, co...3973 days ago
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Bio-Scripts
Download genome using NCBI esearch command line !
#Download using command line "NC_005956.1" / "CP003784.1" esearch -db nucleotide -query "NC_005956.1" | efetch -format fasta > seq1.fa esearch -db nucleotide -query "...1158 days ago
Collision free write with Perl
#Write into outfile -- collision free because of multicore usesage sub collision_free_write { my($outFile, $msg) = @_; open my $ofh, ">>", $outFile or die "$0 [$...2517 days ago
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Groups
R is a free software programming language and a software environment for statistical computing and graphics. The R language is widely used among statisticians and data min...4007 days ago
Tags
MALVA: Genotyping by Mapping-free ALlele Detection of Known VAriants
MALVA is able to genotype multi-allelic SNPs and indels without mapping reads MALVA calls correctly more indels than the most widely adopted genotyping pipelines Mapping-free approaches are as accurate as alignment-based ones, while being faster More at https://www.sciencedirect.com/scien...Tags: MALVA, Genotyping, Mapping-free, ALlele, Detection, Known, VAriants, snp
1615 days ago
Comments
Comment on "URMAP, an ultra-fast read mapper"
map command Maps unpaired reads to a reference genome. The reference genome is stored as a UFI file created by the make_ufi command. The original FASTA file for the...1340 days ago
Comment on "REAPR: a universal tool for genome assembly evaluation"
Reapr is a tool trying to find explicit errors in the assembly based on incongruently mapped reads. It is heavily based on too low span coverage, or reads mapping too...1393 days ago
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