Results for "NGOPT Assembler"
Blogs
String graph based genome assembly software and tools !
..., the developer of ABySS assembler and Richard Durbin. iii)...g graph: 1.SGA (String Graph Assembler) https://github.com/jts/...assembly. As opposed to most assemblers, which are de Bruijn graph b...h3/fermi/ Fermi is a de novo assembler with a particular focus on as...2369 days ago
Bioinformatics tools developed for Oxford Nanopore data analysis !
MinION is the only portable real-time device for DNA and...rs great prospects for genome assembly. Generally, assemblers are based on several differe...net/projects/phusion2/files/smis/ List of assemblers for Oxford Nanopore MinION l...2361 days ago
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Bookmarks
PAired-eND Assembler for DNA sequences
PANDASEQ is a program to align Illumina reads, optionally with PCR primers embedded in the sequence, and reconstruct an overlapping sequence. More at https://github.com/neufeld/pandaseq2991 days ago
- MIRA is a multi-pass DNA sequence data assembler/mapper for whole genome and EST/RNASeq projects. MIRA assembles/map...actually putting too much manual work into it. More at http://mira-assembler.sourceforge.net/docs/Definiti...
2991 days ago
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Files
Evaluation of genome assembly software based on long reads
TGS technologies have been used to produce highly accurate de novo assemb...UAST software. The 11 software that have been evaluated are: Celera Assembler , Falcon , Miniasm, Newbler , SGA Assembler, Smartdenovo, Abruijn, Ra, DB...1960 days ago
- SPAdes—St. Petersburg genome Assembler—was originally developed for de novo assembly of genome sequencing data produced for cultivated microbial isolates and for single-cell g...
864 days ago
Discussion topics
Want to Know which genome assembler rule the world ?
Assemblathon 2: evaluating de novo methods of genome assembly http://www.gigasciencejournal.com/content/2/1/10/abstract http://blogs.nature.com/news/2013/07/geno...3960 days ago
Pages
Genome Assembly Tools and Software - PART2 !!
...caffolds generated by NGS and assemblers into longer chromosomal frag...RePS 2.0 – WGS Sequence AssemblerRePS (Repeat-masked Phrap...her with virtually any genome assembler and any NGS read mapper that...Automatically Optimise Velvet Assembler ParametersVelvetOptimiser&nbs...2726 days ago
Awesome perl frameworks, libraries and software - PART 2
licheng/gccfilter - gccfilter is a perl filter to colorize and simplify (or e...indings for Thrust https://github.com/breach/thrust hotwolf/HSW12 - Assembler and IDE for NXP/Freescale/Mot...2534 days ago
Top-level pages
Useful Publications and Websites for Deep Sequencing Data Analysis
Global overview papers Next generation quantitative gen...49-556, 2012 Full Text [Describes the String Graph Assembler (SGA), which assembled a huma...t and memory efficient string graph-based sequence assembler. Gonnella & Kurtz, BMC Bi...3820 days ago
Commercial and public next-gen-seq (NGS) software
Integrated solutions CLCbio Genomics Workbench - de novo...ly By Short Sequences. ABySS is a de novo sequence assembler that is designed for very sho...gun microreads. ALLPATHS is a whole genome shotgun assembler that can generate high qualit...3559 days ago
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Wire posts
News
Linux operating system aimed at scientists
The Bio-Linux operating system is based on Ubuntu 14.04 LTS (Trusty Tahr), and the p...ed, the QIIME and Bowtie-Bio tools have been upgraded, the pandaseq paired end assembler has been added, and the begin...3434 days ago
Phased Human Genome Assembly !
The new publicly available assembly (PacBio HG00733) has the fewest gaps of any...with the company’s Sequel® System. Using the FALCON-Unzip assembler, maternal and paternal haplot...2076 days ago
Bio-Scripts
Resume the MIRA assembler run !
mira -r manifest_file Usage: mira [options] manifest_file [manifest_file ...] Options: -c / --cwd= directory Change working directory -r / -...1775 days ago
Installing Platypus on Ubuntu !
(py27) ➜ Tools git:(master) ✗ git clone https://github.com/andyrimmer/Platypu...b -lpython2.7 -o build/lib.linux-x86_64-2.7/cwindow.so cythoning cython/assembler.pyx to cython/assembler.c /home/urbe/anaconda3/envs/...2059 days ago
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Tags
- _A5-miseq_ is a pipeline for assembling DNA sequence data generated on the Illumina sequencing platform. This README will take you through the steps necessary for running _A5-miseq_. Point to note: There are many situations where A5-miseq is not the right tool for the job. In order to produce ...
Tags: Bioinformatics, Analysis, NGS, A5-miseq, NGOPT Assembler, Genome
2857 days ago
