Tools to detect synteny blocks regions among multiple genomes
...(with BAC-end or marker sequence). http://genomevolution.org/CoGe/SynMap.pl RegionMiner (http://www.genomatix.de/online_help/help_regionminer/orthologous.html) SyntenyMiner is being...2662 days ago
List of comparative genomics resources !
...atabase Find information about orthologous genes in prokaryotes. An...CONDOR -- COnserved Non-coDing Orthologous Regions A database resource...e conservation. OMA -- the Orthologous MAtrix project Explore ortho...ealogy of genes: Non-supervised Orthologous Groups Discover orthologous...729 days ago
SATSUMA : Highly sensitive whole-genome synteny alignments.
Satsuma is a whole-genome synteny alignment program. It takes two genomes, computes alignments, and then keeps only the parts that are orthologous, i.e. following the conserved order an...2966 days ago
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Tags: MimiLook, Phylogenetic, Workflow, Detection, Gene, Acquisition, Major, Orthologous, Groups, Megavirales
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Mercator: Multiple Whole-Genome Orthology Map Construction
Whole-genome homology maps attempt to identify the evolutionary relationships between and within multiple genomes. The term "syntenic" is often used to describe regions of multiple genomes that are believed to have evolved from the same region in an ancestral genome. However, it has been pointed ...Tags: Mercator, Multiple, Whole-Genome, Orthology, Map, Construction, orthologous, homologous, paralogous, Synteny, ancetral
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Comment on "Tools to detect synteny blocks regions among multiple genomes"
...r Ensembl. Gene annotation: Annotate the genes in each genome using gene prediction software or tools such as MAKER. Identify orthologous genes: Identify the orthologous genes between the genomes usi...475 days ago