List of gene ontology software and tools
...ools/ REVIGO ( Rudjer Boskovic Institute, Croatia) REViGO is a web server that can take long lists of Gene Ontology terms and summarize them by removing redundant GO terms. The remai...3747 days ago
BBTools for bioinformatician !
... Code: $ reformat.sh in=reads.sam out=out.sam sam=1.3 Removing N basecalls You can use BB...han hdist=6. Just be sure to give BBDuk as much memory as possible. Removing illumina adapters (if exact a...2308 days ago
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1130 days ago
Genome Assembly Tools and Software - PART1 !!
...of: 1.Reducing time in analysis and increasing accuracy of results by only considering those reads which should assemble together.2.Reducing/removing reference bias as compared to...2723 days ago
BEReX : Biomedical Entity-Relation eXplorer
..., pathways and so on, related to the current network; expand the network by particular types of entities and relations; and modify the network by removing or adding selected nodes. BER...3877 days ago
Surrogate Variable Analysis (SVA)
The sva package contains functions for removing batch effects and other unwanted var...2007 PLoS Genetics,2008 PNAS), (2) directly removing known batch effects using Com...(Johnson et al. 2007 Biostatistics) and (3) removing batch effects with known cont...3513 days ago
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Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq dataAfterQC can simply go through all fastq files in a folder and then output three folders: good, bad and QC folders, which contains good reads, bad reads and the QC results of each fastq fi...Tags: Automatic, Filtering, Trimming, Error, Removing, Quality, Control, fastq, data
2403 days ago
AfterQC: Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data AfterQC can simply go through all fastq files in a folder and then output three folders: good, bad and QC folders, which contains good reads, bad reads and the QC results of each fastq file/pair. Currently it suppo...Tags: Automatic, Filtering, Trimming, Error, Removing, Quality, Control, fastq, data
2175 days ago
Comment on "Sibelia: A comparative genomics tool"
...tring of length K. At each stage "Sibelia" constructs so called de Bruijn graph, graph of K-mers that occur in the genome, and simplifies it by removing special type of undirected cy...1323 days ago
Comment on "KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies"
...you use the flags for canonical hashes for both sequence 1 and 2, as well as 8 threads. Finally, clean up you working directory by removing the combined fasta file, and...1375 days ago