Results for "adapters"
Blogs
BBTools for bioinformatician !
...sequence of reads with short insert sizes, in case you don't know what adapters were used. It works like this: Code: $ bbmerge.sh in=reads.fq outa=adapters.fa reads=1m Of course, it...2308 days ago
Protocol for De novo Genome Assembly using Illumina Reads
...Scripthttps://bioinformaticsonline.com/snippets/view/42540/install-fastqc-using-conda Quality trimming/cleanup of read files.This function trims adapters, barcodes and other contamina...1241 days ago
Bookmarks
Trimmomatic: A flexible read trimming tool for Illumina NGS data
...e_unpaired.fq.gz ILLUMINACLIP:TruSeq3-PE.fa:2:30:10 LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 This will perform the following: Remove adapters (ILLUMINACLIP:TruSeq3-PE.fa:2...2979 days ago
Porechop: tool for finding and removing adapters from Oxford Nanopore reads
Porechop is a tool for finding and removing adapters from Oxford Nanopore reads. Adapters on the ends of reads are trimmed off, and when...s. Porechop performs thorough alignments to effectively find adapters, even at low sequence identit...2205 days ago
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Awesome perl frameworks, libraries and software - PART 3
...;- A simple terminal-based open source Spritz-alike (per-word RSVP aligned on optimal reading points) plack/Plack - PSGI toolkit and server adapters get-iplayer/get_iplayer ...2531 days ago
Top-level pages
- ...provide a priming site for both amplification and sequencing of the adjoining, unknown nucleic acid. Library A collection of DNA fragments with adapters ligated to each end. BridgeA...
2906 days ago
Bio-Scripts
Installing Porechop on Ubuntu !
...d/lib/porechop copying porechop/adapters.py -> build/lib/porechop cop...chop copying build/lib/porechop/adapters.py -> /home/urbe/anaconda3/li...Porechop: a tool for finding adapters in Oxford Nanopore reads, tri...sible adapters to determine which adapter se...2143 days ago
- ...e.g. Illumina base calls, and detect sequencing level attributes, e.g. adapters CheckIlluminaDirectory (...ina sequencing data into an unmapped SAM or BAM file. MarkIlluminaAdapters (Picard) Reads...
2112 days ago
Tags
Porechop: tool for finding and removing adapters from Oxford Nanopore reads
Porechop is a tool for finding and removing adapters from Oxford Nanopore reads. Adapters on the ends of reads are trimmed off, and when a read has an adapter in its middle, it is treated as chimeric and chopped into separate reads. Porechop performs thorough alignments to effectively find adapte...Tags: Porechop, tool, finding, remove, adapters, Oxford, Nanopore, reads, ONT, NGS, Long
2205 days ago
- Porechop is a tool for finding and removing adapters from Oxford Nanopore reads. Adapters on the ends of reads are trimmed off, and when a read has an adapter in its middle, it is treated as chimeric and chopped into separate reads. Porechop performs thorough alignments to effectively f...
Tags: Nanopore, adapters, Porechop, Clean, ONT
1590 days ago
Comments
Comment on "Installing Porechop on Ubuntu !"
...P006 80.0 82.6 SQK-MAP006 Short 76.9 76.0 PCR adapters 1 82.6 78.3 PCR tail 1 76.7 7...80.8 Barcode 96 (forward) 79.2 76.0 Trimming adapters from read ends SQK-NSK007_Y_T...p removed) Splitting reads containing middle adapters1,634,477 / 1,634,477 (100.0%)...2143 days ago
- ...odules, libraries, frameworks, and tool-kits.These generally conform to similar standards and conventions.For example, almost all of the database adapters (to talk to almost any client...
2556 days ago
