Results for "and specific"
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DAVI: Deep learning-based tool for alignment and single nucleotide variant identification
...sists of models for both global and local alignment and for variant calling. We have...ting state-of-the-art tool sets and found that its accuracy and p...based on data generated from a specific sequencing technology, t...ls proposed in DAVI are generic and can be used across different NGS t...1191 days ago
- ...red numerous times. To help solve this for one and all, BioNumbers (the database...s to the original literature, useful comments, and related numbers. To ci...Acids Res. (2010) 38: D750-D753. When using a specific entry from the database it is...
3953 days ago
- ...rt molecular profiling to create diagnostic, prognostic, and therapeutic strategies precis...s bioinformatics, genomics , genetics, molecular biology and nanotechnology to deliver precise cure/diagnotics to a specific patient. Examples: The dr...
3952 days ago
- ...und introduces some basic commands using the cummeRbund package...t a BAM file of aligned reads and generates a list of likely va...In this protocol we discuss and outline the process of de nov...assembly tutorial to learn a specific case of using Galaxy to carry...
3698 days ago
InfoGenomeR: Integrative reconstruction of cancer genome karyotypes
...oint graph to model the connectivity among genomic segments at the genome-wide scale. InfoGenomeR integrates cancer purity and ploidy, total CNAs, allele-specific CNAs, and haplotype information to identify...1142 days ago
- ...bled sequences remains complicated and mostly limited to technical m...ment of genome assembly, gene set, and transcriptome completeness ba...ftware, with comprehensive lineage-specific sets of Benchmarking Uni...tes, metazoans, fungi, eukaryotes, and bacteria. These conserved...
2962 days ago
- ...eference genomes. Unlike other methods, segemehl is able to detect not only mismatches but also insertions and deletions. Furthermore, segemehl is not limited to a specific read length and is able to map primer- or pol...
2962 days ago
- ...tically changes the output options to the ones specific for the input selected. Then select one or more output types and add your identifiers in the I...vary widely depending on the number of outputs and the options selected. Conversions...
2939 days ago
- ...e Assembly Evaluation Metrics and Reporting (GAEMR) packag...report, or executed individually to generate specific charts and tables. GAEMR standardizes in...pipeline, hence enabling the generation of standard reports. GAEMR’s analysi...
2927 days ago
- CSBB is a command line based bioinformatics suite to analyze b...n Perl, while it also leverages the use of R and python in background for specific modules. Major focus of CSBB is to allow users from biology and bioinformatics community, to get b...
2912 days ago
