2666 days ago
2666 days ago
gbtools: Interactive Visualization of Metagenome Bins in R
...be imported simultaneously; users can choose which annotations to plot. Bins can be manually defined from...hods can be compared side-by-side. gbtools reports summary statistics of bins including marker gene complet...2646 days ago
2223 days ago
mosdepth: fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
...r above a given threshold for each chromosome and genome-wide.quantized output that merges adjacent bases as long as they fall in the same coverage bins e.g. (10-20)threshold output...1681 days ago
RefKA: A fast and efficient long-read genome assembly approach for large and complex genomes
RefKA, a reference-based approach for long read genome assembly. This approach relies on breaking up a closely related reference genome into bins, aligning k-mers unique to each bin with PacBio reads, and then assembling each bin in parallel followed by a final bin-stitching step.1514 days ago
CAT/BAT: tool for taxonomic classification of contigs and metagenome-assembled genomes (MAGs)
...ool (CAT) and Bin Annotation Tool (BAT) are pipelines for the taxonomic classification of long DNA sequences and metagenome assembled genomes (MAGs/bins) of both known and (highly) u...1497 days ago
SqueezeMeta: a fully automated metagenomics pipeline, from reads to bins
...nd can be inspected anywhere using a web interface. Internal checks for the assembly and binning steps inform about the consistency of contigs and bins, allowing to spot potential c...1406 days ago