Results for "identifies"
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HapSolo, that identifies secondary contigs and defines a primary assembly based on multiple pairwise contig alignment metrics. HapSolo evaluates candidate primary assemblies usi...1139 days ago
- ...ose is to allow smaller eukaryotic and prokaryotic genome projects to independently annotate their genomes and to create genome databases. MAKER identifies repeats, aligns ESTs and prot...
3056 days ago
- ...esented in metagenomes. At the genome level with real-world data, ALE identifies three large misassemblies fro...dobacter sphaeroides genome. Using real Pacific Biosciences data, ALE identifies 12 of 12 synthetic errors in...
2978 days ago
ERGO 2.0 Bioinformatics suites
...argest collection of microbial metabolic and non-metabolic pathways, ERGO™ assigns functions to genes, integrates genes into pathways, and identifies previously unknown or mischar...2593 days ago
PASA: Gene Structure Annotation and Analysis
...del gene structures, and to maintain gene structure annotation consistent with the most recently available experimental sequence data. PASA also identifies and classifies all splicing v...2368 days ago
GIGGLE: a search engine for large-scale integrated genome analysis
GIGGLE is a genomics search engine that identifies and ranks the significance of genomic loci shared between query features and thousands of genome interval files. GIGGLE (https://githu...2354 days ago
- ...nding putative exons and constructing splice graphs using an assembled transcriptome and whole genome shotgun sequencing (WGSS) data. ChopStitch identifies exon-exon boundaries in de no...
2180 days ago
CSBFinder: Discovery of colinear syntenic blocks across thousands of prokaryotic genomes
...are consistently located close to each other, in the same order, across a wide range of taxa. CSBFinder incorporates an efficient algorithm that identifies CSBs in large genomic dataset...2066 days ago
Deepbinner: a signal-level demultiplexer for Oxford Nanopore reads
...ral advances that have proven successful in image classification. Unlike other demultiplexers (e.g. Albacore and Porechop), Deepbinner identifies barcodes from the raw signal...2033 days ago
- LTR_retriever is a command line program (in Perl) for accurate identification of LTR retrotransposons (LTR-RTs) from outputs of LTRharvest, LTR_FINDER, and/or MGEScan-LTR...
1986 days ago
