List of gene ontology software and tools
...removing redundant GO terms. The remaining terms can be visualized in semantic similarity-based scatterplots...om/patternlab GOssTo GOssTo and GOssToWeb are tools to calculate the semantic similarity between genes or t...3752 days ago
2946 days ago
REVIGO: Reduced Visualize gene ontology
REViGO can take long lists of Gene Ontology terms and summarize them by removing redundant GO terms. The remaining terms can be visualized in semantic similarity-based scatterplots, in...2147 days ago
Awesome perl frameworks, libraries and software - PART 2
...of IEC 60870-5-104 standard (server and client) theory/semver - Semantic version object for Perl spen...Object Oriented Localization Tool For Perl kasei/attean - A Perl Semantic Web Framework kablamo/git-ri...2536 days ago
Awesome perl frameworks, libraries and software - PART 4
...bsp;- Gate between git and mediawiki trustly/pci-blackbox - PCI-DSS compliant card system built on PostgreSQL and PL/pgSQL tomill/Template-Semantic - Use pure XHTML/XML as...2536 days ago
Awesome perl frameworks, libraries and software - PART 1
...;- Perl script for waking up computers via Wake-On-LAN magic packets dod38fr/config-model - Perl module to create configuration editor wtih semantic validation pjlsergeant/test-...2531 days ago
List of visualization tools for network biology
...Igraph Collection of network analysis tools with the emphasis on efficiency, portability and ease of use http://igraph.sourceforge.net Medusa Semantic and multi-edged simple networ...2330 days ago
PLANT COMPUTATIONAL GENOMICS LAB – JILL WEGRZYN
...ilitate the forest geneticist or ecologist’s ability to analyze, share, and visualize their data. Such integration requires the implementation of semantic technologies and ontologies t...1396 days ago
CrowdGO: Machine learning and semantic similarity guided consensus Gene Ontology annotation
CrowdGO is a protein Gene Ontology predictor using a meta approach, analyzing the predictions of other tools in order to get an improved precision and recall. Please note that the CrowdGO snakemake workflow is currently only tested on Ubuntu. It should work on OSX, but please report any errors t...Tags: CrowdGO, Machine, learning, semantic, similarity, guided, consensus, Gene, Ontology, annotation, GO
752 days ago
Comment on "List of gene ontology software and tools"
Recently published TopoICSim: a new semantic similarity measure based on gene ontology provide a new vie...des a competitive method with robust performance for quantification of semantic similarity between genes and...2874 days ago