Bioinformatics PhDs - Cover Letter
...indicators of your academic achievements and potential: the CV, letters, and writing sample. Most often, however, your cover letter works in tandem with your CV, and represents...3421 days ago
List of motif discovery tools !
...informatics tools at this portal site. T-REKS -- identification of Tandem REpeats in sequences with a K-meanS based algorithm Find information about tandem repeats in proteins that carr...2048 days ago
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Best book Titles for Learning Bionformatics
...ing Protein Mass Spectra: A Comprehensive Resource , A. Peter Snyder, 2000, American Chemical Society Protein Sequencing and Identification Using Tandem Mass Spectrometry , Michael K...3972 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...ed), output- .aln, .tab, .txt Reference genome in FASTA or GENBANK Output: VntrSeek Description: pipeline for discovering microsatellite tandem repeats with high-throughput...2964 days ago
Installing Platypus on Ubuntu !
...-O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I./ -Ic -I/home/urbe/anaconda3/envs/py27/include/python2.7 -c c/tandem.c -o build/temp.linux-x86_64-2.7/c/tandem.o -funroll-loops -D_LARGEFILE...2074 days ago
HipSTR: Haplotype inference and phasing for Short Tandem Repeats
HipSTR was specifically developed to deal with these errors in the hopes of obtaining more robust STR genotypes. In particular, it accomplishes this by: Learning locus-specific PCR stutter models using an EM algorithm Mining candidate STR alleles from population-scale sequencing dat...Tags: HipSTR, Haplotype, inference, phasing, Short, Tandem, Repeats
1940 days ago
ULTRA (ULTRA Locates Tandemly Repetitive Areas) : Effective Labeling of Repetitive Genomic Sequence
ULTRA is a tool to find and annotate tandem repeats inside genomic sequence. It is able to find repeats of any length and of any period (up to a maximum period of 4000). It can find highly decayed repeats missed by other software, and it will also be able to find very large repeats in highly repe...Tags: ULTRA, Tandem, Repetitive, Genomic, Sequence
21 days ago
Comment on "Genome in a Bottle (GIAB) Consortium"
...;is focused on establishing benchmark large indel and structural variant calls, as well as calls in difficult genomic contexts (e.g., homopolymers/tandem repeats and difficult-to-map...1615 days ago