Ten International Scholarships for Indian Biotechnology and Bioinformatics Students
...eir time at one of the partner universities. Read more...9. TRINITY COLLEGE DUBLIN - Ireland...nities, Social Sciences, Science, Computer Science or Engineering, the Trinity College Dublin offers Indian...2594 days ago
Installing Perl environment on Linux
.... Remember to install Perl in supporting multithreading (with option -Dusethreads), which is important for many NGS analysis packages (e.g. Trinity). In this setting, you can us...2363 days ago
RNA-Seq De novo Assembly Using Trinity
Trinity, developed at the Broad Institute an...of transcriptomes from RNA-seq data. Trinity combines three independent so...cess large volumes of RNA-seq reads. Trinity partitions the sequence data...nes. More at https://github.com/trinityrnaseq/trinityrnaseq/wiki ......3007 days ago
SEX-DETector: A Probabilistic Approach to Study Sex Chromosomes in Non-Model Organisms
...the assembly and for the mapping of the reads. A full documentation on the pipeline can be found here. we recommend Trinity for the assembly. Trinity components should be merged w...2209 days ago
Genome Assembly Tools and Software - PART2 !!
...ficient merging of multiple assemblies. It was tested on human and mouse RNA-seq data and is shown to improve significantly on the transABySS and Trinity de novo SOPRA 1.4.6 &n...2728 days ago
Awesome perl frameworks, libraries and software - PART 4
...es - Method and function declarations with signatures, no source filter yogan/cope - A colourful wrapper for terminal programs trinityrnaseq/trinityrnaseq - Trinity RNA-Seq...2536 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...me assembly from RNA-Seq data without a reference genome. Grabherr et al, Nature Biotechnology 29:644 - 652, 2011. PubMed [The software is called Trinity, and is available on Sourcefo...3821 days ago
Genome Assembly Tools and Software - PART1 !!
...complex genomes. TriMetAss 1.2 – The Trinity-based Iterative Metagenomics...Assembler TriMetAss is an extension to the Trinity software [1], which can assem...sets of any kinds of genomic sequences. Trinity 2.1.1 – RNA-Seq De novo...2728 days ago
3207 days ago
'What is Life? A 21st Century Perspective' by Dr Craig Venter
...ntury science was celebrated and reinterpreted for the 21st century in Trinity College Dublin on 12 July 201...', under the auspices of the Dublin Institute for Advanced Studies, in Trinity College Dublin. The lecture p...3947 days ago
2169 days ago
2165 days ago
Comment on "Running Trinity on RNA-seq !"
...ther data explorations. Perform differential expression analysis. Trinity provides direct support for s...ate. If your organism has an assembled genome, consider using the Trinity transcriptome assemblies for...2165 days ago