53 days ago
3960 days ago
Five unique traits of effective computational biologist
Bioinformatics research is driven by large set of software, scripts, and tools to analy...cessary. The good biological programmers learn new technical..." codes. According to my supervisor most of the computationa...distance view of an issue before deep diving into it. 5. Lov...3993 days ago
How to install Perl modules manually, using CPAN command, and other quick ways
As a bioinformatics programmer, and crunchy data analyser you need to install several perl modules and dependenci...XML-Parser-2.36.tar# cd XML-Parser-2.36Build the perl module:.../vendor_perl/5.10.0/usr/lib/perl5/vendor_perl /usr/lib/perl5/...nbsp; [5/5]Installed: perl-CPAN.i386 0:1.9205-31.fc9Dep...3992 days ago
3992 days ago
Well designed regular expression cheat sheet
In our computational biology work, we mostly play with DNA or AA string. For string based programming work this regular expression cheat sheet is really helpful. Keep it handy.3992 days ago
3995 days ago
Regular Expression Cheat Sheet
The Regular Expression are the sole of Perl language, and for bioinformatician it is just a magical stick to resolve gingatic string data. W...good and user friendly regular expression cheat sheet, hence writ...g, assertions and some sample patterns to get you started.3995 days ago
Which are the best statistical programming languages to study for a bioinformatician?
In Bio-informatics based genome sequencing and predicting metabolic pathways research jobs I used Matlab, SAS, SPSS, R and several Bioconductor packages. Matlab had a lot of...ramming skills. I am wondering what other people think is best? or ther...3994 days ago
Selecting between Python 2 and Python 3?
Which version is best for bioinformatician to work on?3994 days ago
Bio++ : C Language libraries for your biological need
...ways been a language that never attempts to tie a programmer down - it allows for...s in C - extending it by supporting features meant to encoura...ating Hidden Markov Models,Improved numerical tools (numerica...).Tree consensus methods, bipartitions, bootstrap value compu...3990 days ago
3990 days ago
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3987 days ago
Donnelly Centre of Cellular & Biomolecular Research (CCBR), Bader Lab
We study the organization and evolution of biolog...computational biology and bioinformatics techniques. We seek to accurately predict links, such as s...cs data like genome sequence and transcript profiles. We are inte...oftware. Predicting biologically relevant protein interactions...3990 days ago
3962 days ago
Bioinformatician become producer/director !!!
If a Bioinformatician starts producing Hindi Bollywood m...BLAST : Eak khoj Munna Bhai Promoter Gene se Genome tak. M...I wale Data le jayenge Raju ban gaya Genefinder. Har...gaya. BLASTana FASTAna. Hamari Sequence aapke pass hai. BL...f Rehta Hai PDB Ek Numbari Structure Dus Numbari GCG Karo S...3961 days ago
Perl Poem: Parse it in both Perl and English!
Larry's, er, corpus has fortunately been overshadowed by that of the reigning Perl Poet, Sharon Hopk...d "Camels and Needles: Computer Poetry Meets the Perl Program...both the Economist and the Guardian: #!/usr/bin/perl APPEAL...ength(of-days) # listen (a perl poem)# Sharon Hopkins# rev....3961 days ago
Personalised Medicine - Animation
Two animated case scenarios set now and in the future. These highlight potential differences in the way patients are treated now, and how they might be treated as healthcare becomes more tailored.3946 days ago
Influenza animation - flu virus mechanism
Animation of the mechanism of an influenza virus and how Crucell's antibodies target the HA1 proteins on the virus and prevent further spread of influenza....ent: Crucell Direction, Design & Animation: Daniel Lim, 2Preform Music & Sound Design: Ja...3895 days ago
Install BLAST in Ubuntu/Linux and Window !
...ll -c bioconda blast #Windows installation First: Download ftp://ftp.ncbi.n...blast+/2.7.1/ncbi-blast-2.7.1+-win64.exe with your web browser. #If that FTP...les/blast+/2.7.1/ncbi-blast-2.7.1+-win64.exe #Run this installer using the...1189 days ago
2959 days ago
Which of the following programming language is best for a bioinformatics beginner?
I will be doing NGS in the course of my research work and I will like to learn a programming language which is compatible with most bioinformatics tools or software. I basically want to...ions welcomed. Which languages would you recommend to a student wishing...3573 days ago
Which math/statistics programming language/application do you most frequently use in bioinformatics?
I'm doing a bit more statistical analysis on some bioinformatics things lately, and I'm curious if there are any programming languages that are particularly good for this NGS computation. What suggestions do you guys have? Are there any languages that have exceptionally good libraries?3569 days ago
Interview with a bioinformatician series ...
The aim of this series to interviews some notable bioinformaticians to get their views on various aspects of bioinformatics research. Hopefully these answers will prove u...ful to others in the field, especially to those who are just starting their bioinfor...3459 days ago
Tryst with a Bioinformatician # Dr Altan Kara
Dr Altan Kara is a Bioinformatics specialist at the faculty of Gene Engineering and Biotechnology Institut...lexibility. As well known, there are highly diverse and compl...NSCLC will be determined and relations with the clinical, tu...rokaryotic TCS protein structure prediction and inhibitor des...2404 days ago
3995 days ago
3995 days ago
Statistics Using R with Biological Examples
This book is a manifestation of my desire to teach researchers in biology a bit more about statistics than an ordinary introductory course covers and to introduce the utilization of R as a tool for analyzing their data. My goal is to reach those with little or no training in higher level statisti...Tags: Bioinformatics, R, Stats, Biology, Book, BioConductor, NGS
2573 days ago
R Graphical Cookbook by Winston Chang
R Graphical Cookbook by Winston Chang A very nice book by Winston Chang for R ethusiast. The R code presented in these pages is the R code actually used to produce the Figures in the book. There will be differences compared to the code chunks shown in the text of the book, but in most cases the ...Tags: Bioinformatics, Analysis, NGS, R, Graphics, Books
2197 days ago
Comment on "LoReTTA, a user-friendly tool for assembling viral genomes from PacBio sequence data"
Detail paper here https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8111061/8 days ago
Comment on "Basic command-line to run BLAST"
Understanding the parameters https://www.arabidopsis.org/Blast/BLASToptions.jsp440 days ago