Comment on "Modular, efficient and constant-memory single-cell RNA-seq preprocessing"
scRNA-seq_intro https://pachterlab.github.io/kallistobustools/tutorials/scRNA-seq_intro/python/scRNA-seq_intro/1264 days ago
Comment on "List of non-commercial NGS genotype-calling software"
...ructural variant discovery by integrated paired-end and split-read analysis. [ paper-2012 ] lumpy &n...for structural variant discovery. [ paper-2014 ] manta &n...nt IDentification Software Suite. [ paper-2017 ]smoove &nd...1281 days ago
Comment on "How to install Perl modules manually, using CPAN command, and other quick ways"
...(existing) conda env conda activate envname # cpanm is available on either cond...da config --add channels conda-forge # Install cpanm conda install perl-app-cpa...ename is the name of the Perl package you want cpanm packagename1320 days ago
Comment on "Letter of motivation for bioinformatics applicants !"
...ch/degree position while writing an application. Hence, the motivation letter is the perfect insight into what you genuinely are and anticipate doing it justice....1359 days ago
Comment on "How to install Perl modules manually, using CPAN command, and other quick ways"
Check the perl module Test if dependencies are met by running this perl one-liner: perl -e "use JSON::XS;"1373 days ago
Comment on "URMAP, an ultra-fast read mapper"
map command Maps unpaired reads to a reference genome. The reference genome is stored as a UFI fi...x should also be built with the -veryfast option, though UFI indexes are compatible with map regardless of w...1422 days ago
Comment on "Sibelia: A comparative genomics tool"
...the output format. The "far" parameters set can be used for a...king directory. Setting this parameter will change output dir...d synteny block cover. First part of the file describes input...ag is used by "C-Sibelia". Parameters set --------------...1423 days ago
Comment on "Mugsy: multiple whole genome alignment tool"
Set up the environment bash source /path/to/install/mugsyenv.sh Run mugsy...). Header lines in the FASTA files should not contain ':' or '-' to avoid parsing problems. View or par...1424 days ago
Comment on "Basic command-line to run BLAST"
Original paper https://www.sciencedirect.com/science/article/pii/S00222836058036021433 days ago
Comment on "KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies"
...we can plot the kmer content of the assembly compared to the kmer content of the...e kat comp to create a kmer content comparison. Use kat comp --hel...ou? How much of the kmer “noise” is part of the final assembly? Wha...1475 days ago