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Five unique traits of effective computational biologist
Bioinformatics research is driven by large set of software, scrip...and tools to analyse gigantic biological data. Being a great biological programmer or bioinformatician involves more...operating at mediocre levels because something was not a goo...4006 days ago
How to install Perl modules manually, using CPAN command, and other quick ways
...talling Perl modules manually by resolving all the dependencies is tedious and annoying proce...install.# make installAs a newbie it looks pretty simple, and...bsp; &nb...data (yes/no)? [yes]Policy on building prerequisites (follow,...4006 days ago
Well designed regular expression cheat sheet
In our computational biology work, we mostly play with DNA or AA string. For string based programming work this regular expression cheat sheet is really helpful. Keep it handy.4006 days ago
List of popular bioinformatics software/tools
In current genome era, our day to day work is to handle the huge geneome sequences, expression data, several other datasets. This link provide a comprehensive list of commonly used sofware/tools.4001 days ago
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Regular Expression Cheat Sheet
...xpression are the sole of Perl language, and for bioinformatician it is just a m...n cheat sheet, hence write our own cheat sheet. The Regular Expressions Che...ence guide for regular expressions, including symbols, ranges, grouping, asserti...4008 days ago
Which are the best statistical programming languages to study for a bioinformatician?
In Bio-informatics based genome sequencing and predicting metabolic pathways research jobs I used Matlab, SAS, SPSS, R and several Bioconductor packages. Matlab h...I am wondering what other people think is best? or there might not be one...4007 days ago
Selecting between Python 2 and Python 3?
Which version is best for bioinformatician to work on?4007 days ago
Bio++ : C Language libraries for your biological need
...a genuinely useful standard library that can itself be implemented in C, and it is...ted in C/C++ language for the biological programming? If yes...truncation, concatenation, sub-sequences, etc.In silico mole...move spaces, tokenize, switch between upper/lower case, etc.A...4003 days ago
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Donnelly Centre of Cellular & Biomolecular Research (CCBR), Bader Lab
We study the organization and evolution of biological systems using computational biology and bioinformatics tech...rested to find how these links are rewired by mutations to cause disease....-source biological pathway and network databases and visualization and ana...4004 days ago
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Bioinformatician become producer/director !!!
If a Bioinformatician starts producing Hindi Bollywood movies, names will be like this.... BLAST : Eak...er Gene se Genome tak. Maine BLAST kiya. NCBI wale Data le...na hi tha. Mera sequence mera base. Markov aapke hai kaun....Rehte Hein Do Sequence Baarah Hit Tera Ligand Chal Ga...3974 days ago
Perl Poem: Parse it in both Perl and English!
...rry's, er, corpus has fortunately been overshadowed by that of the reigning Perl Po...ng Language". (The paper is available as misc/poetry.ps on C...Sharon is also the most widely published, having had the followi...); do*not*die (like this)if sin abounds; keys (hidden), open (l...3974 days ago
Personalised Medicine - Animation
Two animated case scenarios set now and in the future. These highlight potential differences in the way patients are treated now, and how they might be treated as healthcare becomes more tailored.3960 days ago
Influenza animation - flu virus mechanism
Animation of the mechanism of an influenza virus and how Crucell's antibodies target the HA1 proteins on...on, Design & Animation: Daniel Lim, 2Preform Music & Sound Design: Javier Barrero, Logical Disorder Produ...3908 days ago
Install BLAST in Ubuntu/Linux and Window !
#On ubuntu sudo apt-get install ncbi-blast+ #Ubuntu Conda installation conda install -c bioconda blast #Windows installation...p://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.7.1/ncbi-blast-2....ler using the defaults, it should put BLAST under C:\Program Files\NC...1203 days ago
2973 days ago
Which of the following programming language is best for a bioinformatics beginner?
I will be doing NGS in the course of my research work and I...ke to learn a programming language which is compatible with most bioinformatics tools or softwar...commend to a student wishing to enter the world of bioinformatics?3586 days ago
Which math/statistics programming language/application do you most frequently use in bioinformatics?
I'm doing a bit more statistical analysis on some bioinformatics things lately, and I'm curious if there are any programming languages that are particularly good for this NGS computation. What suggestions do you guys have? Are there any languages that have exceptionally good libraries?3582 days ago
Interview with a bioinformatician series ...
The aim of this series to interviews some notable bioinformaticians to get their views on various aspects of bioinformatics research. Hopefully these an...he field, especially to those who are just starting their bioinformatics careers.This ser...3472 days ago
Tryst with a Bioinformatician # Dr Altan Kara
...ush you to join Computational Biology/Bioinformatics? Ac...se to describe yourself? Bioinformatician. :) Can y...I do not experience any memorable scientific disappointment i...d dynamically changes. As the bioinformatics progress, new to...2418 days ago
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Comment on "LoReTTA, a user-friendly tool for assembling viral genomes from PacBio sequence data"
Detail paper here https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8111061/21 days ago
Comment on "Basic command-line to run BLAST"
Understanding the parameters https://www.arabidopsis.org/Blast/BLASToptions.jsp454 days ago