Structural variation: the hidden genomic treasure
Genome re-sequencing projects have revealed substantial amounts of genetic variation between individuals extending beyond single nucleotide polymorphisms (SNPs) and short indels. Struc...2746 days ago
2204 days ago
Many-to-many pairwise alignments of two sequence sets
...score where the score of an alignment is equal to the sum of the matches taken from the scoring matrix, minus penalties arising from opening and extending gaps in the aligned sequences...2190 days ago
Bio++ : C Language libraries for your biological need
...guage, yet sufficiently abstract and fluent to describe algorithms and interactions in a wide variety of environments. C++ has its basis in C - extending it by supporting features mea...3991 days ago
Awesome perl frameworks, libraries and software - PART 2
...esters/Test-Reporter - (Perl) Sends perl module test results to CPAN Testers CpanelInc/Custom-cPanel-Module - Example Perl module for extending the cPanel API cosimo/perl5-...2537 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...a flexible visualization method. We leveraged the ANNOVAR (Wang et. al, 2010) framework for assigning functional impact to genomic variations by extending its list of reference annotat...2952 days ago
Genome Assembly Tools and Software - PART1 !!
...iDe – novel Assembler The StriDe Assembler integrates string and de Bruijn graph by decomposing reads within error-prone regions, while extending paire-end read into long read...2729 days ago
Graduate research assistantships @ University of Nebraska-Lincoln (UNL)
...models, polygenic modeling of binary traits, reexamining the results from quantitative genetics analysis in light of functional annotation, and extending kernel methods (such as GBLUP...3526 days ago
Tadpole is 250x faster than SPADes assembler !
...in=libA_r1.fq,libA_merged.fq in2=libA_r2.fq,null extra=libB_r1.fq out=ecc_libA_r1.fq,ecc_libA_merged.fq out2=ecc_libA_r2.fq,null mode=correct Extending contigs with reads could be d...1019 days ago
993 days ago
Comment on "GraphMap - A highly sensitive and accurate mapper for long, error-prone reads"
...pq < INT, read will be called unmapped. [1] --extcigar - Use the extended CIGAR format for output alignments. [false] --no-end2end - Disables extending of the alignments to the ends...2335 days ago