Computer simulation of genetic mechanism !!
...igration and demography http://code.google.com/p/recodon/ rlsim A package for simulating RNA-seq library preparation with parameter estimation http://bit.ly/rlsim-git...3018 days ago
2573 days ago
7th International Conference on Bioinformatics and Computational Biology (BICoB)
...stering, function prediction, motif discovery, functional site recognition in protein, RNA and DNA sequences. Phylogenetics: Phylogeny estimation, models of evolution, compara...3541 days ago
Kraken: ultrafast metagenomic sequence classification using exact alignments
...omputationally expensive, forcing researchers to use faster abundance estimation programs, which only classify...09 times faster than Megablast and 11 times faster than the abundance estimation program MetaPhlAn. Kraken is...2912 days ago
Bio++ : C Language libraries for your biological need
...Phylogenetic reconstuction methods Parsimony (NNI)Distance matrices estimation and I/O to files in Phylip fo...supported!Mixed models (beta). Molecular evolution tools Parameter estimation under maximum likelihood.Ance...3990 days ago
Genome Assembly Tools and Software - PART2 !!
...CEM 0.9.1 – Transcriptome Assembly and Isoform Expression Level Estimation from Biased RNA-Seq ReadsCEM&...Genome Analyzer ConPADE 1.00 – Contig Ploidy and Allele Dosage EstimationConPADE is a tool used to...2728 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...fferential expression analysis of small RNA sequencing experiments. McCormick et al., Silence2(1):2, 2011 PubMedCentral RNA-Seq gene expression estimation with read mapping uncertainty...3822 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...combination, migration and demography http://code.google.com/p/recodon/rlsim A package for simulating RNA-seq library preparation with parameter estimation http://bit.ly/rlsim-gitRmetas...3780 days ago
SRF position in Computational Systems Biology Computational biology Group, IIIT-Delhi
...nd for the project. Preferred Qualifications: - Expertise in dynamical systems theory, bifurcation theory, numerical simulations, parameter estimation. Independence and high mo...3766 days ago
3912 days ago
Tadpole is 250x faster than SPADes assembler !
...elow this. trimends=0 (trim) Trim contig ends by this much. Trimming by K/2 may yield more accurate genome size estimation. contigpasses=16 Build c...1019 days ago
2180 days ago
2842 days ago