Comment on "Command line to create blast uniref database !"
wget ftp://ftp.uniprot.org/pub/databases/uniprot/uniref/uniref90/uniref90.fasta.gz gunzip -v uniref90.fasta.gz makeblastdb -in uniref90.fasta -dbtype prot -input_type fasta -out uniref90.fasta999 days ago
Comment on "URMAP, an ultra-fast read mapper"
...gn) to get input from a pipe. If the reads are gzip-compressed, the filename must end in .gz. Piped input must be decompressed (you can always add gunzip to the pipe if needed). Th...1337 days ago
Comment on "KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies"
...single file, for gzipped files, this can be done with zcat, or for unzipped files cat. Ex....orking directory by removing the combined fasta file, and re-zipping any unzipped files. Then download the...1390 days ago
Comment on "Shasta long read assembler"
Latest release are here https://github.com/chanzuckerberg/shasta/releases1603 days ago
Comment on "List of Bioinformatics Vacancy, Jobs, Opportunity websites"
...CC5P4q%2FjNyn7ihR74LQubT1BthhYtL5I6uKdba6tR8uiTotVecSxrij7E5AbC5qzhZCQb4yXNzDonaHV00Ix51VPy0Z5JfP88IO51lgy4AXEKZmGtFtGyy%2FYu6RWEKumX%2BxVIGbmfHB9mvFUe%2BASNZJpMRV%2BUhkovbTuhtg%2F%2F%2F1p...2110 days ago
Comment on "Indexcov: fast coverage quality control for whole-genome sequencing"
Installing goleft ➜ falconUnzip_assembly bioconda install goleftzsh: command not found: bioconda➜ falconUnzip_assembly conda install gole...2129 days ago
Comment on "poRe: an R package for the visualization and analysis of nanopore sequencing data"
...ts.git We will assemble using SPAdes, so let’s go get that: wget http://spades.bioinf.spbau.ru/release3.6.2/SPAdes-3.6.2-Linux.tar.gz gunzip < SPAdes-3.6.2-Linux.tar...2227 days ago
Comment on "Basic command-line to run BLAST"
...021576] urbe@urbo214b[Human_vs_Avaga_protein] gunzip protein.fa.gz []urbe@urbo21...437049] urbe@urbo214b[Human_vs_Avaga_protein] gunzip Adineta_vaga.v2.pep.fa.gz [...ein] [] urbe@urbo214b[Human_vs_Avaga_protein] gunzip protein.fa.gz []urbe@urbo21...2297 days ago
Comment on "Important Journals, Blogs and Forums for Bioinformaticians"
...un Blue Collar Bioinformatics Bioinformatics Bits and Pieces Bits of DNA Bioinformatics Zen MassGenomics Kevin’s GATTACA World Genomes Unzipped Xiaole Shirley Li...2374 days ago
Comment on "List of Bioinformatics Vacancy, Jobs, Opportunity websites"
Bioinformatics jobs in New Zealand https://www.seek.co.nz/jobs?keywords=bioinformatics2688 days ago