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Comment on "Short-read assembly using Spades !"
...his can be done through a command-line interface or a graphical...tools assess the completeness and accuracy of the assembled gen...ly using SPAdes. However, the specific parameters used for SPAdes an...ols may vary depending on the specific research question and the cha...468 days ago
- ...nt error rates, read lengths, and insert sizes. The ART is open...gsim tool is also open-source and available for free download....late reads from large genomes and can handle complex genome str...the simulator depends on the specific research question and the typ...
468 days ago
Comment on "Tools for Sequence translation !"
...upports several genetic codes and can handle multiple sequences...upports several genetic codes and can also perform reverse tran...upports several genetic codes and provides a user-friendly inte...choice of tool depends on the specific requirements of the user, inc...473 days ago
Comment on "Tools for Differential expression analysis"
...ution to model the count data and provides methods for estimati...model to model the count data and provides methods for estimati...a part of the Cufflinks suite and is used for differential expr...choice of tool depends on the specific research question, the type o...473 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
...omparison of the genomic structure and gene content of two or more r...enes are genes that are homologous and have a common ancestor, but h...genomes by comparing the location and order of the orthologous gene...s that have been lost or gained in specific lineages, and inferring the e...476 days ago
Comment on "Biological databases !"
NCBI released a set of GATK-specific dbSNP VCF's, with the "chr" attached. Those can be accessed at ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606/VCF/GATK/.1596 days ago
- ...To restrict canu to only a specific stage, use: -correct - g...mble - generate trimmed reads and then assemble them The assem...ts are 0.300 for PacBio reads and 0.500 for Nanopore reads. correcte...ogy they were generated with, and any processing performed: -pacbio-...
2151 days ago
Comment on "LAMSA: fast split read alignment with long approximate matches"
..., deletion, one-end-extend: insertion, deletion). [2(,2,2,2)] -w --band-width[INT] Band width for banded-SW. [10] -b...options: -r --max-out [INT] Maximum number of output records for a specific split read region. [10] -g --...2175 days ago
- ...kit comprises user-friendly stand alone tools for quality contr...SequenceSummary objects allow specific tests and functionality...design, process optimization and quality control before computation...cript-annotated reads, strand specificity), coverage (like mean cove...
2190 days ago
Comment on "Comparative genomics educational material and papers bookmarks"
...ch as Cnidaria (jellyfish, corals, hydroids and sea anemones) and Porifera (sponges). However,...different immune gene families in a lineage-specific manner. To investigate h...: Actiniaria), we performed a comprehensive and comparative study using 10 newly s...2786 days ago
