Results for "Genomes Analyses"
Top-level pages
Apps for Busy Bioinformatics Researchers !!!
DNAApp: DNAApp: for iPhone/iPad This is an iOS app that allows for the opening and analysis of DNA sequencing fil...nctional impacts of SNPs. Database entries represent nsSNPs in dbSNP and 1000 Genomes...3594 days ago
Software packages for next gen sequence analysis
Integrated solutions * CLCbio Genomics Workbench - de novo and refe.... A suite created by the 1001 Genomes project. Source for POSIX. *...s. A tool created by the 1001 Genomes project. Source for POSIX. *...nology, back to the reference genomes, and carry out post-analysis....3295 days ago
Comprehensive list of visualization tools for biological pathways
The study of biological pathways is a key to understand the different processes inside a cell: proteins exert their...://kpv.kazusa.or.jp/ KEGG Atlas Interactive Kyoto Encyclopedia of Genes and Genomes...2339 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
Commercial tools Strand NGS offers many different tools inclu...nce Haplotypes: Links to 1000 Genomes and HapMap downloads Output:...sion should work with diploid genomes Input: requires BAM files (a...mal-tumor pair and two parent genomes; quantifies descent-by-modifi...2961 days ago
Tools for Searching Repeats And Palindromic Sequences
What are genomic interspersed repeats? In the mid 1960's scientists discovered that many genomes contain stretches of highly repetitive DNA sequences ( see Reassociation Kinetics Experiments, and C-...2263 days ago
- alignment: the mapping of a raw sequence read to a location within a reference genome. The mapping occurs because t...nome that can be used for mapping short DNA sequence reads for comparisons of genomes...
2921 days ago
Genome Assembly Tools and Software - PART1 !!
...reported for the assembly of genomes while the others are designed aiming at handling complex genomes. TriMetAss 1.2 – The...nabled discovery in microbial genomes, large eukaryotic genomes, di...specifically intended for metagenomes. Contiguity 1.0.4 –...2738 days ago
Awesome perl frameworks, libraries and software - PART 1
A curated list of awesome Perl frameworks, libraries and s...ng tool to automate and standardise bioinformatics analyses on cluster environments. den...ng tool to automate and standardise bioinformatics analyses on cluster environments. die...2541 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
kallisto Transcript abundance quantification from RNA-seq data (uses pseudoalignm...ng long sequence (e.g., ONT or PacBio reads, draft genomes) Software (Perl) https://gi...sification of metagenomic reads to known bacterial genomes...2423 days ago
Single Cell RNAseq data analysis tutorial !!
A major breakthrough (replaced microarrays) in the late 00’s and has been wid...s://github.com/diazlab/SCell Beta-Poisson model for single-cell RNA-seq data analyses https://github.com/nghiavtr/...2403 days ago
