Results for "Length"
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PerlOneLiner for Bioinformatician
...erl -ne 'print unless /^$/'perl -lne 'print if length'perl -ne 'print if /\S/' # R...and 36] } 1..8' # Create a string of specific lengthperl -le 'print "a"x50' # Cre..._ % 2 == 0} 1..100; print "@even"' # Find the length of the stringperl -le 'print...2329 days ago
Awk for Bioinformatician and computational biologist
...f the form print CONDITION ? PRINT_IF_TRUE_TEXT : PRINT_IF_FALSE_TEXT. For example, in the code below, we identify sequences with lengths > 14: $ awk '{print (length($2)>14) ? $0">14" : $0"...2307 days ago
- ...rint sum / n; }' To get sequence length for all sequences in a fasta...qlen=0;next; } { seqlen = seqlen +length($0)}END{print seqlen}' \filen.../>/p;2~4p' To get fastq read length distribution: cat reads.fast...t; file To filter fastq based on length (here larger than or equal to...
2244 days ago
- ...og=', mode 'w' at 0x7f85d1de31e0>, longreads=[], mapq=10, mem=16, minLength=200, nocleaning=True, nogapcl...ibrary...Insert size statistics Mates orientation statsFastQ files read length median mean stdev FF FR RF RR...
2217 days ago
LINKS scaffolder bloomfilter setting !
...imum link ratio between two best contig pairs (default -a 0.3, optional) *higher values lead to least accurate scaffolding* -z minimum contig length to consider for scaffolding (...2178 days ago
Understanding BLASTn output format 6 !
...lumn headers:qseqid sseqid pident length mismatch gapopen qstart qend...e of identical matches 4. length alignment length 5....tfmt "6 qseqid sseqid pident qlen length mismatch gapope evalue bitsco... Raw scorelength Alignment lengthpident Percentage of identi...2166 days ago
- ...epeats), SSRs are short DNA sequences consisting of a tandem repeat of a few nucleotides, typically 2-6 nucleotides in length. There are different types of SSRs based on the length and pattern of the repeated s...
450 days ago
Steps to find all the repeats in the genome !
...RepeatMasker tool with the "--length" option[0]. Here's a step-by-...dir <output_directory> -length <min_length>-<max_le...t files to be saved. <min_length> and <max_len...asker .out file, and <length_file> with the path t...275 days ago
Mitochondrial genome assembly tools !
...When selecting a mitochondrial genome assembly tool, it's important to consider the specific characteristics of your sequencing data, such as read length and coverage, as well as the...269 days ago
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