Results for "Algorithm Development"
Top-level pages
Awesome perl frameworks, libraries and software - PART 1
...down --- No longer under active development since MMD 3 PerlDancer/Dan... - DuckDuckHack OpenSource Development Application CaptTofu/DBD-mys...version for scientific software development khrt/Raisin - Raisin -...RC bot written in Perl. grantm/Algorithm-CouponCode - Perl library...2544 days ago
Phylogenetic & Molecular Genetics Terms and Definitions
analog -- A feature that appears similar in two taxa which have originated from two di.... From the Greek word "klados", meaning branch or twig. cladogenesis -- The development of a new clade; the splitting...2516 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
kallisto Transcript abundance quantification from RNA-seq data (uses pseudoalignment for rapid determination...ird-generation NGS data (can distinguish patients’ specific mutations; algorithm u...2426 days ago
- When you have both Illumina and Nanopore data, then SPAdes remains a good option for hybrid assembly - SPAdes was us...bruijn graph(s) - 31, 51 and 71 only run the assembler, not the correction algorithm (...
2405 days ago
Single Cell RNAseq data analysis tutorial !!
...eneous systems, e.g. early development studies, complex tissues (b...al Gene Expression during Heart Development http://www.cell.com/develo...nt regulatory network inference algorithm from single-cell RNA-Seq during...pression Relationships (SLICER) algorithm for inferring cell trajectories...2405 days ago
Edit distance application in bioinformatics !
There are other popular measures of edit distance, which are calculated using a diff...; print "@distances"; # prints "2 0 3" use Algorithm::LCSS qw( LCSS CSS CSS_Sorted...ein::XS are both versions of the Levenshtein algorithm t...2395 days ago
Bioinformatics Web Application Development with Perl
...he Internet. Web Application Development The old days of CGI programs and the simple development style that represented seem c...PIs for extension and further development. It's the most mature of the...of the huge ecosystem of Perl development available on the CPAN without...2376 days ago
PerlOneLiner for Bioinformatician
FILE SPACING------------ # Double space a fileperl -pe '$\="\n"'perl -pe 'BEGIN { $\="\n...Calculate GCM of numbers 20 and 35 using Euclid's algorithmperl -le '$n = 20; $m = 35; ($...# Find and print all permutations of a listperl -MAlgorithm::...2357 days ago
List of visualization tools for network biology
...genomics.com/downloads/ PIVOT Layout algorithms for visualizing protein inte.... Scatter plots and dimensionality reduction algorithms https://www.broadinstitute....ftware/spectralnet Tulip Enables the development of algorithms, visual encodin...2343 days ago
List of visualization tools for genome alignments
Genome browsers are useful not only for showing final results but also for improving analysis protocols, testin...compatible http://www.htslib.org/ SEWAL Uses a locality-sensitive hashing algorithm t...2338 days ago
