Software packages for next gen sequence analysis
...data. Commercial next-gen-seq software that extends the CLCbio Main Workbench software. Includes SNP detection, CHiP...S. * SeqMan Genome Analyser - Software for Next Generation sequence...* SWIFT - The SWIFT suit is a software collection for fast index-bas...rance. * MapNext - MapNext: A software to...3294 days ago
Comprehensive list of visualization tools for biological pathways
The study of biological pathways is a key to understand the different processes inside a cell: proteins exert their...s://www.omix-visualization.com PathVisio Biological pathway analysis software th...2339 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
Commercial tools Strand NGS offers many different tools includ...er, HiSeq, MiSeq, IonTorrent Software Suite: can upload sequence of...heterozygous SNPs and Indels; software composed of 2 modules (kissnp...gle version 4 Description: software package: genotype calling, ph...2960 days ago
Tools for Searching Repeats And Palindromic Sequences
What are genomic interspersed repeats? In the mid 1960's scientists discovered that many genomes contain stretches...reversed 180°), still reads CGAAGC. The European Molecular Biology Open Software Su...2263 days ago
2921 days ago
Genome Assembly Tools and Software - PART1 !!
The genome assemblers generally take a file of short sequence reads...revolutionary bioinformatics software for automatic DNA sequence as...cs. Rnnotator is an automated software pipeline that generates trans...ome Data. Trans-ABySS is a software pipeline for analyzing ABySS-...2737 days ago
Source Code and Pseudo Code !!
An algorithm is a procedure for solving a problem in terms...n sufficient detail so as to directly support the programming effort. It is the purpose of...de should be identical to its implementation in a programming language. Try to indent at le...2711 days ago
Awesome perl frameworks, libraries and software - PART 1
.../blawd - Simple Blogging Software in Perl, similar to blosxome...tribution hzhou/MyDef - Programming in the next paradigm -- your...sp;- A modern object-oriented programming language, implemented in Perl...messages Perl-Toolchain-Gang/Software-License - perl representati...2541 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
kallisto Transcript abundance quantification from RNA-seq dat...special type of k-mers) Software (C++) http://www.csbio.unc.e...from NGS data (k-mer based) Software (Python) https://github.com/...PacBio reads, draft genomes) Software (Perl) https://github.com/wa...2423 days ago
Single Cell RNAseq data analysis tutorial !!
A major breakthrough (replaced microarrays) in the late 00’s and has been widely used since Measures the&n...gle-cell RNA-seq data with Bioconductor SCell: single-cell RNA-seq analysis software h...2402 days ago