Phylogenetic & Molecular Genetics Terms and Definitions
..., and is then called an adaptive radiation. rank -- In traditional taxonomy, taxa are ranked according to...tematics is usually divided into the two areas of phylogenetics and taxonomy. taxon -- Any named group of...2489 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...Software (Python) http://jordan.biology.gatech.edu/page/software/stringMLST Taxonomer k-mer-based ultrafast metagenomics tool for assigning taxonomy to sequencing reads from clin...2398 days ago
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Edit distance application in bioinformatics !
...lows only transposition. use Text::Levenshtein qw(distance); print distance("foo","four"); # prints "2" my @words = qw/ four foo bar /; my @distances = distance("foo",@...2368 days ago
Tools for bacterial whole genome annotation
...ad and can be tested online via the MAKER Web Annotation Service (MWAS). MyPro is a software pipeline for...reptococcal strains to produce submission-ready, annotated draft genomes. MyPro installed as a virtual mac...2359 days ago
Bioinformatics Web Application Development with Perl
...n ORM can perform much better than even clever hand-written code. Because it builds on the Perl DBI, it scales everywhere from SQLite to PostgreSQL, MySQL, Oracle, and more. Rose::...2349 days ago
PerlOneLiner for Bioinformatician
...[0-9]|[0-9][0-9]|1[0-9][0-9]|2[0-4][0-9]|25[0-5])$/ # Match an IP addressmy $ip_part = qr|([0-9]|[0-9][0-...?b>|<$1strong>|g # Extract all matches from a regular expressionmy @matches = $text =~ /regex/g;...2330 days ago
Python learning resources for bioinformatics and computational biologist !
...in Object-Oriented Design (Python) (PDF) (2.1.1) Building Skills in Python (PDF) (2.6) Code Like a Pythonista: Idiomatic Python CodeCademy Python Composing Programs&nb...2283 days ago
Some useful Bioinformatics links
...o assembly | Oxford Nanopore Technologies https://nanoporetech.com/taxonomy/term/131 De novo long-read as...rticle/pii/S096098221731076X?via%3Dihub#fig4 How to determine chimeras in my de novo assembly? - SEQanswer...2269 days ago
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