Results for "Data Mining Algorithm"
Top-level pages
RNA-sequencing (RNA-seq) has a wide variety of applications, but no single a...review all of the major steps in RNA-seq data analysis, including experimen.... A survey of best practices for RNA-seq data a...s. EBI RNA-Seq exercise An open RNA-Seq data anal...2391 days ago
Edit distance application in bioinformatics !
There are other popular measures of edit distance, w...); print "@distances"; # prints "2 0 3" use Algorithm::LCSS qw( LCSS CSS CSS_Sorted...tein::XS are both versions of the Levenshtein algorithm that require a C compiler, bu...2381 days ago
Tools for bacterial whole genome annotation
RAST – Web tool (upload contigs), uses the subsystems in the SEED database and provides detaile...apable of processing a larger data volume. NCBI's annotati...umbers to the user's sequence data b...hine and supported by updated databases will enable biologists to per...2372 days ago
Bioinformatics Web Application Development with Perl
Perl's second wave of adoption came from the growth of the world wide web. Dynamic web p...erable DBI module has been the focal point of databa...ows it to provide the same interface to huge relational databases...2362 days ago
PerlOneLiner for Bioinformatician
FILE SPACING------------ # Double space a fileperl -pe '...Calculate GCM of numbers 20 and 35 using Euclid's algorithmperl -le '$n = 20; $m = 35; ($...# Find and print all permutations of a listperl -MAlgorithm::Permute -le '$l = [1,2,3,4,5...2342 days ago
List of visualization tools for network biology
...and dimensionality reduction algorithms https://www.broadinstitu...manually and import external data http://tinyurl.com/yEdGraph/...m for managing, comparing and mining multiple networks http://tyna.g...VisANT Visualization, mining, analysis and modeling of biolog...2328 days ago
List of visualization tools for genome alignments
Genome browsers are useful not only for showing final resul...e assembly and associated metadata http://www.bcgsc.ca/platform...t-generation sequencing (NGS) data and the results of analyses w...a locality-sensitive hashing algori...d visualization of sequencing data http://wanglab.ucsd.edu/star/brow...2324 days ago
Awk for Bioinformatician and computational biologist
Awk is a programming language which allows easy manipulation of structured data and is mostly used for patter...ted by semicolon.Say you have data.tsv with the following conten...m the file. $ awk '{print;}' data/test.tsvcontig1 ACTGTCTGTCACT...TTTATATATT You can also store data in t...2320 days ago
Computational resources for TE discovery and TE detection
Transposable Elements (TEs) to genome structure and evolution as well as their impact on gen...ttp://tlife.fudan.edu.cn/ltr_finder/ LTR_STRUC http://www.genetics.uga.edu/retrolab/data/LTR_...2314 days ago
Webinar on RNA-Seq Data Analysis on 28 Feb 2018
Strand NGS is a biologist friendly NGS analysis tool that allows biologists to analyze their data using a very intuitive workflow f...ysis and visualization of RNA-Seq data. This webinar will give an ov...that supports large scale RNA-Seq data a...ysis and leaves more time for end data inte...2304 days ago
