Single Cell RNAseq data analysis tutorial !!
...ep workflow for low-level analysis of single-cell RNA-seq data with Bioconductor SCell: single-cell RNA-s...rly/2016/09/14/045070 Single-Cell Resolution of Temporal Gene Expression during Heart Development http:/...2393 days ago
2393 days ago
Edit distance application in bioinformatics !
...$STR1, $STR2 ); # ref to array of strings There are many different modules on CPAN for calculating th...algorithm that require a C compiler, but will be a lot faster than this module. The Damerau-Levenshtein e...2383 days ago
Tools for bacterial whole genome annotation
...lic License version 3.0 and is accessible at: http://www.cbrc.kaust.edu.sa/BEACON/. BlastKOLA: Assig...the user's sequence data by BLAST searches, respectively, against a nonredundant set of KEGG GENES. KOALA...2374 days ago
Bioinformatics Web Application Development with Perl
...e it popular and, in some ways, the duct tape of the Internet. Web...elopment may have made the CGI.pm module central, modern Perl web pr...ective ways, and the project has produced a lot of new code that doe...Of course the CPAN has modules for almost any NoSQL datab...2364 days ago
BBSplit: Read Binning Tool for Metagenomes and Contaminated Libraries
...ed with e.coli and salmonella, you could do this:bbsplit.sh in=reads.fq ref=ecoli.fa,salmonella.fa basename=out_%.fq outu=clean.fq int=tThis will produce 3 output files:out_ecoli.fq...2356 days ago
PerlOneLiner for Bioinformatician
...;|g # Extract all matches from a regular expressionmy @matches = $text =~ /regex/g; PERL TRICKS----------- # Print the version of a Perl moduleperl -MModule -le 'print $Module::VERSION...2344 days ago
List of visualization tools for network biology
...quantify associations between individuals, which makes it possible t...e http://igraph.sourceforge.net Medusa Semantic and multi-edged s...Scatter plots and dimensionality reduction algorithms https://www....r space http://www.sailing.cs.cmu.edu/main/?page_id=545 tYNA ...2330 days ago
List of visualization tools for genome alignments
...tion web toolkit for regional genomic sequences http://bioapp.psych.uic.edu/DNannotator.htm JVM J...with a ‘percent identity plot’ (pip) http://pipmaker.bx.psu.edu/pipmaker/ PileLineGUI ...2326 days ago
Linux Commands Cheat Sheet for Bioinformatics and Computational Biology Professionals
The purpose of this cheat sheet is to introduce biologist and bioinformatician to the frequently used tool... — show the manual for command df — show disk usage du — show directory s...2323 days ago